BtaEX6009775 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002297 | CACNB4
Description
calcium channel, voltage-dependent, beta 4 subunit [Source:HGNC Symbol;Acc:HGNC:1404]
Coordinates
chr2:44403446-44410115:+
Coord C1 exon
chr2:44403446-44403568
Coord A exon
chr2:44408267-44408397
Coord C2 exon
chr2:44410039-44410115
Length
131 bp
Sequences
Splice sites
3' ss Seq
TCGTTGTTTCTGTGTTCCAGAAA
3' ss Score
9.75
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
Exon sequences
Seq C1 exon
TCTAAACCCGTAGCATTTGCTGTGAAGACGAATGTGAGCTACTGTGGTGCCTTGGACGAGGATGTGCCTGTTCCAAGCACGGCCATCTCCTTTGACGCGAAGGATTTTCTACACATAAAAGAG
Seq A exon
AAATATAACAATGATTGGTGGATAGGAAGGCTGGTGAAAGAAGGCTGTGAGATTGGCTTCATCCCAAGTCCGCTGAGATTGGAGAACATACGGATTCAGCAGGAACAGAAAAGGGGCCGTTTTCACGGAGG
Seq C2 exon
GAAATCTAGTGGAAATTCTTCTTCAAGTCTCGGAGAAATGGTATCAGGGACATTTCGAGCAACTCCCACATCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002297-'10-8,'10-7,11-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.227 C2=0.852
Domain overlap (PFAM):
C1:
PF120523=VGCC_beta4Aa_N=PD(2.4=2.4),PF0001823=SH3_1=PU(44.2=46.3)
A:
PF0001823=SH3_1=PD(51.2=50.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATTTGCTGTGAAGACGAATGT
R:
TGTTGATGTGGGAGTTGCTCG
Band lengths:
187-318
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]