DreEX0018237 @ danRer10
Exon Skipping
Gene
ENSDARG00000009738 | cacnb4a
Description
calcium channel, voltage-dependent, beta 4a subunit [Source:ZFIN;Acc:ZDB-GENE-080320-2]
Coordinates
chr9:38301813-38308043:+
Coord C1 exon
chr9:38301813-38301935
Coord A exon
chr9:38305243-38305370
Coord C2 exon
chr9:38307967-38308043
Length
128 bp
Sequences
Splice sites
3' ss Seq
TTGTCTATTTATTTTAATAGAAG
3' ss Score
5.8
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
GCCAAAGCGGTGGCCTTTGCTGTGAGGACAAACGTCAGCTACTGCGGTGCCCTGGATGAAGATGTTCCTGTCGCTGGCACAGCCATTTCTTTTGATGCTAAAGATTTTCTTCACATCAAGGAG
Seq A exon
AAGTACAACAACGACTGGTGGATCGGCCGACTGGTGAAGGAAGGTTGTGACATCGGATTCATTCCCAGTCCCTTAAAACTGGAAAACATTCGCTTACAGCAAGACCAAAAAAGAGGCCGTTTCCATGG
Seq C2 exon
GAAGTCCAGTGGAAACTCCTCCTCCAGTCTGGGTGAAATGGTGTCAGGCACATTCAAGCCCAACCCTGCTTCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000009738-'4-5,'4-4,5-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.209 C2=0.963
Domain overlap (PFAM):
C1:
PF120523=VGCC_beta4Aa_N=PD(2.4=2.4),PF0001823=SH3_1=PU(42.9=43.9)
A:
PF0001823=SH3_1=PD(52.4=51.2)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGCGGTGGCCTTTGCTG
R:
GCAGAAGCAGGGTTGGGC
Band lengths:
195-323
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]