GgaEX0018913 @ galGal4
Exon Skipping
Gene
ENSGALG00000012511 | CACNB4
Description
voltage-dependent L-type calcium channel subunit beta-4 isoform c [Source:RefSeq peptide;Acc:NP_989675]
Coordinates
chr7:34848553-34852678:-
Coord C1 exon
chr7:34852556-34852678
Coord A exon
chr7:34850010-34850140
Coord C2 exon
chr7:34848553-34848629
Length
131 bp
Sequences
Splice sites
3' ss Seq
GAAACCTTTCTGTGTTCCAGAAA
3' ss Score
8.06
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
TCCAAACCAGTAGCGTTTGCTGTTAAGACCAATGTGAGTTACTGTGGAGCTCTGGATGAAGATGTCCCTGTCCCAAGCACTGCCATCTCTTTTGATGCGAAGGACTTCCTACACATTAAAGAG
Seq A exon
AAATACAATAATGACTGGTGGATAGGGAGACTGGTGAAGGAGGGCTGCGAAATTGGTTTCATTCCGAGCCCGCTTAGACTGGAGAATATCCGCATCCAGCAGGAGCAGAAGAGAGGACGTTTCCATGGAGG
Seq C2 exon
GAAATCAAGTGGGAATTCTTCTTCAAGTCTTGGAGAAATGGTTTCCGGCACGTTTCGAGCCACACCTACTTCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012511_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.239 C2=0.972
Domain overlap (PFAM):
C1:
PF120523=VGCC_beta4Aa_N=PD(2.4=2.4),PF0001823=SH3_1=PU(44.2=46.3)
A:
PF0001823=SH3_1=PD(51.2=50.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAAACCAGTAGCGTTTGC
R:
TGGAAGTAGGTGTGGCTCGAA
Band lengths:
197-328
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]