BtaEX6088284 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002036 | CACNB1
Description
Bos taurus calcium channel, voltage-dependent, beta 1 subunit (CACNB1), mRNA. [Source:RefSeq mRNA;Acc:NM_175819]
Coordinates
chr19:40302353-40303488:+
Coord C1 exon
chr19:40302353-40302475
Coord A exon
chr19:40303043-40303179
Coord C2 exon
chr19:40303412-40303488
Length
137 bp
Sequences
Splice sites
3' ss Seq
CCTGCCGTTGTTGTTTGCAGAAA
3' ss Score
10.21
5' ss Seq
CAGGTGTCT
5' ss Score
2.68
Exon sequences
Seq C1 exon
ACCAAGCCGGTGGCATTTGCTGTGCGGACAAATGTCGGCTACAACCCATCTCCAGGGGATGAGGTGCCTGTGCAGGGAGTGGCCATCACCTTCGAGCCTAAGGACTTCCTACACATCAAAGAG
Seq A exon
AAATACAATAATGACTGGTGGATCGGGCGACTGGTGAAGGAGGGCTGTGAGGTTGGCTTCATCCCCAGCCCTGTCAAACTGGACAGCCTGCGCCTGCTGCAGGAACAGAAGCTGCGCCAGAACCGCCTCAGCTCCAG
Seq C2 exon
CAAATCAGGTGACAACTCCAGCTCCAGCCTGGGAGACGTGGTGACTGGCACCCGCCGCCCCACGCCCCCTGCCAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002036-'3-6,'3-5,4-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.488 A=0.196 C2=1.000
Domain overlap (PFAM):
C1:
PF120523=VGCC_beta4Aa_N=PD(2.4=2.4),PF0001823=SH3_1=PU(44.2=46.3)
A:
PF0001823=SH3_1=PD(51.2=47.8)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATTTGCTGTGCGGACAAAT
R:
GTGCCAGTCACCACGTCTC
Band lengths:
162-299
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]