BtaEX6022025 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010830 | LRP1
Description
low density lipoprotein receptor-related protein 1 [Source:HGNC Symbol;Acc:HGNC:6692]
Coordinates
chr5:56615931-56625644:-
Coord C1 exon
chr5:56625516-56625644
Coord A exon
chr5:56625132-56625395
Coord C2 exon
chr5:56615931-56616093
Length
264 bp
Sequences
Splice sites
3' ss Seq
CTTGTCTCCTGTGTCTCCAGAGC
3' ss Score
9.83
5' ss Seq
ACCGTGAGT
5' ss Score
9.4
Exon sequences
Seq C1 exon
ACTTCGACGAGTGCTCGGTGTATGGCACCTGCAGCCAGCTGTGCACCAACACAGATGGTTCCTTCACGTGCGGCTGTGTGGAAGGGTACCTGCTGCAGCCAGACAACCGCTCCTGCAAGGCCAAGAATG
Seq A exon
AGCCGGTTGACCGGCCCCCTGTGCTGCTGATTGCCAACTCGCAGAACATCCTGGCCACGTACCTGAGTGGGGCCCAGGTTTCCACCATCACACCCACCAGCACACGGCAGACCACAGCCATGGACTTCAGCTACGCCAACGAGACGGTGTGCTGGGTGCATGTTGGCGACAGCGCTGCCCAGACACAGCTCAAGTGCGCCCGCATGCCCGGCCTGAAGGGCTTCGTGGATGAGTACACCATCAACATCTCCCTCAGCCTGCACC
Seq C2 exon
ATGTGGAGCAGATGGCCATCGACTGGCTGACCGGCAACTTCTACTTTGTGGATGACATTGATGACAGGATCTTTGTCTGCAACCGAAACGGGGACACGTGTGTCACTCTCCTAGACCTGGAGCTGTACAACCCCAAGGGCATTGCACTGGACCCTGCCATGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010830-'5-7,'5-6,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=79.5)
A:
NO
C2:
PF0005812=Ldl_recept_b=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTGCTCGGTGTATGGCAC
R:
CCCATGGCAGGGTCCAGT
Band lengths:
284-548
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]