RnoEX6031907 @ rn6
Exon Skipping
Gene
ENSRNOG00000025053 | Lrp1
Description
LDL receptor related protein 1 [Source:RGD Symbol;Acc:1307535]
Coordinates
chr7:70901347-70912081:-
Coord C1 exon
chr7:70911953-70912081
Coord A exon
chr7:70911579-70911842
Coord C2 exon
chr7:70901347-70901509
Length
264 bp
Sequences
Splice sites
3' ss Seq
GCCCTTTCTCCCATCCTCAGAGC
3' ss Score
10.87
5' ss Seq
ACCGTGAGT
5' ss Score
9.4
Exon sequences
Seq C1 exon
ATTTTGACGAATGCTCTGTGTATGGCACTTGCAGCCAGCTTTGCACCAACACAGATGGCTCCTTCACATGTGGCTGTGTTGAAGGTTACCTGCTGCAACCGGACAACCGCTCATGCAAGGCCAAGAATG
Seq A exon
AGCCAGTAGATCGGCCCCCGGTGCTACTGATTGCCAACTCCCAGAACATCCTAGCTACGTACCTGAGCGGAGCCCAGGTGTCTACCATCACACCCACCAGCACCCGACAGACCACAGCCATGGACTTCAGTTATGCCAACGAGACTGTATGCTGGGTACATGTTGGGGACAGTGCTGCCCAGACGCAGCTCAAGTGTGCCCGGATGCCTAGCCTGAAGGGCTTCGTGGATGAGCATACCATCAACATCTCCCTGAGTCTGCACC
Seq C2 exon
ACGTTGAGCAGATGGCTATCGACTGGCTGACTGGGAACTTCTACTTTGTGGATGACATCGATGACAGGATCTTTGTCTGTAACCGAAATGGGGACACCTGTGTCACTTTGCTGGACCTGGAGCTCTACAATCCCAAAGGCATCGCCCTGGACCCTGCCATGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025053-'7-8,'7-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=79.5)
A:
NO
C2:
PF0005812=Ldl_recept_b=WD(100=74.5),PF0005812=Ldl_recept_b=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTTGACGAATGCTCTGTGTATGG
R:
CCCATGGCAGGGTCCAGG
Band lengths:
292-556
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]