MmuEX6051935 @ mm9
Exon Skipping
Gene
ENSMUSG00000040249 | Lrp1
Description
low density lipoprotein receptor-related protein 1 [Source:MGI Symbol;Acc:MGI:96828]
Coordinates
chr10:127032341-127042970:-
Coord C1 exon
chr10:127042842-127042970
Coord A exon
chr10:127042465-127042728
Coord C2 exon
chr10:127032341-127032503
Length
264 bp
Sequences
Splice sites
3' ss Seq
TTTCTCTGTCCCATCCCCAGAGC
3' ss Score
10.9
5' ss Seq
ACCGTGAGT
5' ss Score
9.4
Exon sequences
Seq C1 exon
ATTTTGACGAGTGTTCCGTGTATGGCACCTGCAGCCAGCTTTGCACCAACACAGATGGCTCCTTCACATGTGGCTGTGTTGAAGGCTACCTGCTGCAACCGGACAACCGCTCCTGCAAGGCCAAGAATG
Seq A exon
AGCCAGTAGATCGGCCGCCAGTGCTACTGATTGCCAACTCTCAGAACATCCTAGCTACGTACCTGAGTGGGGCCCAAGTGTCTACCATCACACCCACCAGCACCCGACAAACCACGGCCATGGACTTCAGTTATGCCAATGAGACCGTATGCTGGGTGCACGTTGGGGACAGTGCTGCCCAGACACAGCTCAAGTGTGCCCGGATGCCTGGCCTGAAGGGCTTTGTGGATGAGCATACCATCAACATCTCCCTCAGCCTGCACC
Seq C2 exon
ACGTGGAGCAGATGGCAATCGACTGGCTGACGGGAAACTTCTACTTTGTCGACGACATTGACGACAGGATCTTTGTCTGTAACCGAAACGGGGACACCTGTGTCACTCTGCTGGACCTGGAACTCTACAACCCCAAAGGCATCGCCTTGGACCCCGCCATGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040249-'5-6,'5-4,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=79.5)
A:
NO
C2:
PF0005812=Ldl_recept_b=WD(100=74.5),PF0005812=Ldl_recept_b=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGAGTGTTCCGTGTATGGC
R:
CCATGGCGGGGTCCAAGG
Band lengths:
286-550
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: