BtaEX6022169 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017840 | BAZ2A
Description
bromodomain adjacent to zinc finger domain, 2A [Source:HGNC Symbol;Acc:HGNC:962]
Coordinates
chr5:57157656-57158891:+
Coord C1 exon
chr5:57157656-57157788
Coord A exon
chr5:57157894-57158040
Coord C2 exon
chr5:57158665-57158891
Length
147 bp
Sequences
Splice sites
3' ss Seq
TCCTTACAACCCTGGTCCAGACC
3' ss Score
4.44
5' ss Seq
CAGGTACGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
ATCATACGAGATCACCCCTCGAGTTCGGGCCTGGCGCCAAACGCTAGAGCGATGCCGGAGCGCAGCCCAAGTCTGCTTGTGCCTGGGCCAGCTGGAGAGGTCCATTGCCTGGGAGAAGTCTGTCAACAAAGTG
Seq A exon
ACCTGTCTAGTCTGCCGGAAGGGTGACAACGATGAGTTTCTTCTACTTTGTGATGGGTGTGACCGTGGCTGCCATATTTACTGCCTTCGGCCCAAGATGGAGGCTGTCCCAGAAGGAGACTGGTTCTGTGCTGTCTGTCTGGCCCAG
Seq C2 exon
CAGGTAGAAGGAGAATTGACTCAGAAATCTGGTTTCCCAAAACGAGGCCAGAAGCGGAAAAGCGGTTATGTGCTGACCTTCCCAGAGGGTGACAACCGCCGGCGCCGGCTGCTACCAAGGGGCCGAGAGAGCCCAGCAGTGCCCCGGTACTCAGAGGAAGGGCTGTCCCCCTCGAAGCGGCGGCGCGTCTCCATGCGGAACCATCACAGTGATCTCACATTCTGCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017840-'38-44,'38-42,39-44=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.408
Domain overlap (PFAM):
C1:
NO
A:
PF0062824=PHD=WD(100=100.0)
C2:
PF0043920=Bromodomain=PU(1.2=1.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCCATTGCCTGGGAGAAGTCT
R:
TCACTGTGATGGTTCCGCATG
Band lengths:
245-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]