MmuEX0007709 @ mm9
Exon Skipping
Gene
ENSMUSG00000040054 | Baz2a
Description
bromodomain adjacent to zinc finger domain, 2A [Source:MGI Symbol;Acc:MGI:2151152]
Coordinates
chr10:127562325-127563297:+
Coord C1 exon
chr10:127562325-127562457
Coord A exon
chr10:127562555-127562701
Coord C2 exon
chr10:127563074-127563297
Length
147 bp
Sequences
Splice sites
3' ss Seq
GCCTTTTCACGATGGTCCAGACC
3' ss Score
4.9
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
ATCCTATGAGATCACCCCTCGTGTCCGAGTTTGGCGGCAGACACTTGAAAGGTGCCGTAGTGCAGCCCAAGTGTGCTTGTGCATGGGCCAGCTAGAAAGGTCCATCGCGTGGGAGAAGTCTGTCAACAAAGTG
Seq A exon
ACCTGCCTGGTCTGCCGGAAGGGCGATAATGATGAGTTTCTCCTGCTGTGTGATGGGTGTGACCGAGGCTGCCACATTTACTGTCATCGGCCCAAGATGGAGGCTGTTCCAGAAGGAGATTGGTTCTGTGCTGTCTGTCTGTCCCAG
Seq C2 exon
CAGGTAGAGGAAGAGTACACTCAGAGGCCTGGTTTTCCAAAACGAGGTCAGAAGCGGAAAAGTAGTTTTCCACTGACCTTCCCAGAAGGTGACAGCCGGCGGCGGATGTTGTCAAGGAGCCGAGATAGTCCAGCAGTGCCTCGGTACCCAGAAGACGGGCTGTCTCCCCCCAAAAGACGGCGACATTCGATGAGAAGTCACCACAGTGATCTCACATTTTGCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040054-'40-47,'40-45,42-47
Average complexity
C1
Mappability confidence:
100%=100=80%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.573
Domain overlap (PFAM):
C1:
NO
A:
PF0062824=PHD=WD(100=100.0)
C2:
PF0043920=Bromodomain=PU(1.2=1.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAGATCACCCCTCGTGTCC
R:
CTCGGCTCCTTGACAACATCC
Band lengths:
252-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: