DreEX6079023 @ danRer10
Exon Skipping
Gene
ENSDARG00000102974 | baz2a
Description
bromodomain adjacent to zinc finger domain, 2A [Source:ZFIN;Acc:ZDB-GENE-041010-202]
Coordinates
chr23:6746355-6748080:-
Coord C1 exon
chr23:6747945-6748080
Coord A exon
chr23:6746830-6746976
Coord C2 exon
chr23:6746355-6746584
Length
147 bp
Sequences
Splice sites
3' ss Seq
CGATACGTGTGTGCCCTCAGACT
3' ss Score
7.6
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
TTTGGAGAGTGAGATCACACCCAGGTTGAGGACGTGGCGTCAGGGTCTGGACCGCTGTCGCAGCTCGTCTCAGCTCTCTCTCTGTCTGCTGCAGCTGGAGAAGGCCATTGCCTGGGAGAGATCCATCATTAAAGTG
Seq A exon
ACTTGTCAGGTGTGTCGTAAGGGTGATGATGATGAGTATCTGCTGTTGTGTGACGGCTGTGATCGTGGGTGTCACATGTTCTGCCTGAGGCCGAAGGTCCTCCAGGTGCCAGATGGCGATTGGTTCTGTCCCAACTGCGTTGCCAAG
Seq C2 exon
AAAACGGGTGAATCTCCAAGATCTCAGCGCTCGTCACGCCAGAGGTCGAAGGTGCGCAAGCGGCGTCTGGGAGAGGACAGTTCGGATGAGGAGGAAGGCTTCAGACGGAGCATGACCACCCGACAGAAGGAGACTCCAGCTCCCTCCAGCAGCAGCAGCAGCACCAGCATCTCTCCCTCCAAACGCAGACGGATGACCACACGAAACCAGCCTGACCTCACATACTGCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102974-'40-44,'40-43,42-44=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.844
Domain overlap (PFAM):
C1:
NO
A:
PF0062824=PHD=WD(100=100.0)
C2:
PF0043920=Bromodomain=PU(1.2=1.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCGTCTCAGCTCTCTCTCT
R:
TTTGGAGGGAGAGATGCTGGT
Band lengths:
257-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]