GgaEX1010590 @ galGal4
Exon Skipping
Gene
ENSGALG00000012579 | BAZ2B
Description
bromodomain adjacent to zinc finger domain protein 2B [Source:RefSeq peptide;Acc:NP_990008]
Coordinates
chr7:36055241-36059630:-
Coord C1 exon
chr7:36059495-36059630
Coord A exon
chr7:36058747-36058893
Coord C2 exon
chr7:36055241-36055500
Length
147 bp
Sequences
Splice sites
3' ss Seq
CCATTTTTCATCTATTATAGTAC
3' ss Score
7.6
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
AACTGAAGAGGATATTGCTCCAGGGCTGAGGGTATGGAGAAAGGCGTTGTCAGAAGCACGAAGTGCTGCACAGGTAGCTCTGTGCATTCAGCAGTTACAGAAATCGATAGCATGGGAAAAATCTATTATGAAAGTT
Seq A exon
TACTGCCAAATATGTCGAAAGGGAGATAATGAGGAACTGCTGCTGCTTTGTGATGGTTGTGATAAAGGCTGTCATACCTACTGCCACAGACCCAAGATCACTACCATACCAGATGGTGACTGGTTTTGTCCTGCCTGCATAGCAAAG
Seq C2 exon
GCAAGTGGTCAAACTCTAAAATTAAAAAAACTTCAAATAAAAGGAAAAAAAAGTAATGAACAAAAGAGAGGCAGGAAATTACCAGGAGATACAGAAGATGAAGACTCTGCGACTACTAGTACCTCATTAAAAAGAGGGAAAACAGAACCTAAGAAAAGGAAAATGGATGAAAGTGTTTCTGTAAGCCAAGGAAAACAAGAAAATTTCACTGCTATAAAGAAACCTAAAAGAGATGACTCCAAGGACCTGGCTATATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012579-'62-68,'62-65,63-68
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=0.000 C2=0.632
Domain overlap (PFAM):
C1:
NO
A:
PF0062824=PHD=WD(100=100.0)
C2:
PF0043920=Bromodomain=PU(1.2=1.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGGATATTGCTCCAGGGCTGA
R:
AGTCGCAGAGTCTTCATCTTCTG
Band lengths:
242-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]