BtaEX6009621 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020654 | BAZ2B
Description
bromodomain adjacent to zinc finger domain, 2B [Source:HGNC Symbol;Acc:HGNC:963]
Coordinates
chr2:37133495-37146156:+
Coord C1 exon
chr2:37133495-37133630
Coord A exon
chr2:37136816-37136962
Coord C2 exon
chr2:37145894-37146156
Length
147 bp
Sequences
Splice sites
3' ss Seq
TGATTTTTCATGTATTATAGTAC
3' ss Score
6.31
5' ss Seq
AAGGTACGA
5' ss Score
9.78
Exon sequences
Seq C1 exon
AATTGAAGAGGATATTGCTCCAGGGCTCAGGGTATGGAGAAGGGCATTATCAGAAGCTCGCAGTGCTGCACAGGTAGCTCTGTGCATTCAGCAGTTACAGAAATCAATAGCATGGGAAAAATCAATTATGAAAGTT
Seq A exon
TACTGCCAGATATGTCGAAAGGGAGATAATGAAGAACTGCTCCTCCTTTGTGATGGCTGTGACAAAGGCTGTCATACATACTGCCACAGACCCAAGATTACAACTATACCAGATGGGGATTGGTTTTGTCCAGCTTGCATTGCTAAG
Seq C2 exon
GCAAGTGGTCAAACCCTAAAAATCAAAAAACTTCATGTCAAAGGAAAAAAGAGCGAGTCAAAAAAAGGCAAGAAAGTGACTTTAACAGGGGATACTGAAGATGAAGACTCTGCATCAACGAGCAGTTCGCTGAAAAGAGGGGTCAAAGACCTGAAAAAAAGAAAAATGGAGGAAAACAGTTCTATTAACATATCGAAGCAAGAAAGTTTCACTTCTGTTAAGAAACCTAAAAGAGATGACTCCAAGGACCTAGCTCTTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020654-'63-68,'63-65,64-68=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=0.000 C2=0.432
Domain overlap (PFAM):
C1:
NO
A:
PF0062824=PHD=WD(100=100.0)
C2:
PF0043920=Bromodomain=PU(1.2=1.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGGCTCAGGGTATGGAGAA
R:
CGAACTGCTCGTTGATGCAGA
Band lengths:
245-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]