DreEX6020941 @ danRer10
Exon Skipping
Gene
ENSDARG00000057782 | baz2ba
Description
bromodomain adjacent to zinc finger domain, 2Ba [Source:ZFIN;Acc:ZDB-GENE-070615-37]
Coordinates
chr6:11759240-11766075:+
Coord C1 exon
chr6:11759240-11759375
Coord A exon
chr6:11763625-11763771
Coord C2 exon
chr6:11765777-11766075
Length
147 bp
Sequences
Splice sites
3' ss Seq
TTTGTTGTTTGTGTTCTTAGTAC
3' ss Score
6.9
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
GGGAGAGGAAGAGATTGCTCCAGGAATGAAGCTCTGGCGGAAAGCTTTGAGTGAGGTGCGCAGCTCCTCTCAGCTGGCCATGTGTCTGCAGCAGCTGCAGAAGTCCATCGCCTGGGAAAAGTCTATCATGAAAGTG
Seq A exon
TACTGTCAGATATGCCGAAAGGGTGATAATGAAGACCTGCTTCTGCTGTGTGACGGCTGTGATAAGGGCTGTCACACCTATTGCCACAAACCCAAGATAACCACCATTCCAGAGGGAGACTGGTACTGCCCCGACTGCATTTCCAAG
Seq C2 exon
GCAAGTGGTCAGTCACCAAAATCAAAATCGAAGACCCCGAATCGCACAGCACCAGCCAGCGGAGGGAAAAAGACAGCAGAAGCAGCCAAGAAAAGCAAGAAGCAGGCAGAAACGGGTGAAGAAGAGGAGGCTACCAGCAGCACCAACAGCACCCCAAAGAAAGCAACCGCCGCCTCCAGCCAGAACAAGAAGAACAGCGCATCCACCCCAAACCAGATGGCTCCCAAACCGGACAGTCCCGCCTGCGTGAAAAGAGCCAAAACAGCCCGGGACAACAACCGCGACCTGGGGCTGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057782-'50-45,'50-44,51-45=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=0.000 C2=0.850
Domain overlap (PFAM):
C1:
NO
A:
PF0062824=PHD=WD(100=100.0)
C2:
PF0043920=Bromodomain=PU(1.2=1.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGAATGAAGCTCTGGCGGAAA
R:
CTGCTGGTAGCCTCCTCTTCT
Band lengths:
254-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]