HsaEX6016168 @ hg19
Exon Skipping
Gene
ENSG00000123636 | BAZ2B
Description
bromodomain adjacent to zinc finger domain, 2B [Source:HGNC Symbol;Acc:963]
Coordinates
chr2:160182164-160193588:-
Coord C1 exon
chr2:160193453-160193588
Coord A exon
chr2:160189051-160189197
Coord C2 exon
chr2:160182164-160182429
Length
147 bp
Sequences
Splice sites
3' ss Seq
TGATTTTTCATGTATTATAGTAC
3' ss Score
6.31
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
AATTGAAGAGGATATTGCTCCAGGGCTCAGGGTATGGAGAAGGGCATTATCAGAAGCTCGCAGTGCTGCACAGGTAGCTCTGTGCATTCAGCAATTACAGAAATCAATAGCATGGGAAAAATCAATTATGAAAGTT
Seq A exon
TACTGCCAAATCTGTCGAAAGGGAGATAATGAAGAACTGCTTCTTCTTTGTGATGGCTGTGACAAAGGCTGTCATACCTACTGCCATAGACCCAAGATTACAACAATCCCAGATGGAGACTGGTTTTGTCCAGCTTGCATTGCTAAG
Seq C2 exon
GCAAGTGGTCAAACTCTAAAAATCAAAAAACTTCATGTCAAAGGAAAAAAGACTAATGAGTCAAAGAAAGGCAAGAAGGTAACTTTAACAGGAGATACTGAAGATGAAGACTCTGCATCTACAAGTAGTTCACTAAAAAGAGGAAACAAAGACCTCAAGAAAAGAAAAATGGAGGAAAACACTTCTATTAACTTGTCAAAACAAGAAAGTTTTACTTCAGTTAAGAAACCTAAAAGAGATGACTCCAAGGACCTAGCTCTTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000123636-'54-54,'54-52,55-54=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.002 A=0.000 C2=0.551
Domain overlap (PFAM):
C1:
NO
A:
PF0062824=PHD=WD(100=100.0)
C2:
PF0043920=Bromodomain=PU(1.2=1.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGGATATTGCTCCAGGGCTCA
R:
AGATGCAGAGTCTTCATCTTCAGT
Band lengths:
248-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)