RnoEX6016970 @ rn6
Exon Skipping
Gene
ENSRNOG00000056984 | Baz2b
Description
bromodomain adjacent to zinc finger domain, 2B [Source:RGD Symbol;Acc:1309801]
Coordinates
chr3:45971107-45976926:-
Coord C1 exon
chr3:45976791-45976926
Coord A exon
chr3:45972929-45973075
Coord C2 exon
chr3:45971107-45971372
Length
147 bp
Sequences
Splice sites
3' ss Seq
GTGGGTTTTGTATGTTGTAGTAC
3' ss Score
5.15
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
AGTTGAAGAGGACATTGCTCCAGGGCTCAGGGTCTGGAGAAGGGCGTTAGCAGAGGCTCGCAGTGCTGCACAGGTAGCCCTGTGCATCCAGCAGTTACAGAGATCAATAGCATGGGAAAAATCAATTATGAAAGTT
Seq A exon
TACTGCCAGATCTGTCGAAAGGGAGACAATGAGGAACTGCTGCTACTCTGTGACGGCTGTGACAAAGGCTGCCATACCTACTGCCACAGGCCCAAGATTACAACTATTCCTGACGGGGACTGGTTTTGTCCAGCTTGCATCGCTAAG
Seq C2 exon
GCAAGCGGTCAGAGTATAAAAATTAAAAAAATTCATATCAAAGGAAAAAAGACAAATGAATCCAAGAAAAGCAAGAAAGGAAACGTCGCTGGGGACACTGAAGACGAAGACTCCACTTCCACAAGCAGTTCACTCAAACGAGGAAGCAAAGATCTCAAAAAGAGGAAAATGGAGGAAAACACTTCCCTCCACTTGTCAAAAGCAGAAAGTGCTACTTCCGTTAAGAAACCGAAAAAAGAAGAGTGCAAGGACCTGGCTCTCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056984-'56-63,'56-61,59-63=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=0.000 C2=0.629
Domain overlap (PFAM):
C1:
NO
A:
PF0062824=PHD=WD(100=100.0)
C2:
PF0043920=Bromodomain=PU(1.2=1.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGAGGACATTGCTCCAGGG
R:
TCTTCGTCTTCAGTGTCCCCA
Band lengths:
242-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]