MmuEX6101480 @ mm10
Exon Skipping
Gene
ENSMUSG00000026987 | Baz2b
Description
bromodomain adjacent to zinc finger domain, 2B [Source:MGI Symbol;Acc:MGI:2442782]
Coordinates
chr2:59901726-59907051:-
Coord C1 exon
chr2:59906916-59907051
Coord A exon
chr2:59903159-59903305
Coord C2 exon
chr2:59901726-59901991
Length
147 bp
Sequences
Splice sites
3' ss Seq
GTGCTCTCCTTGTATTGTAGTAC
3' ss Score
6.73
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
Exon sequences
Seq C1 exon
AATTGAAGAGGATATTGCTCCAGGGCTCAGGGTCTGGAGAAGGGCCTTAGCAGAAGCTCGCAGTGCTGCGCAGGTAGCCCTGTGCATCCAGCAGTTACAGAGATCAATAGCATGGGAAAAATCAATTATGAAAGTT
Seq A exon
TACTGCCAGATCTGTCGGAAGGGCGACAATGAAGAGCTGCTTCTACTCTGCGACGGCTGTGACAAAGGCTGCCACACCTACTGCCACAGGCCCAAGATTACAACTATCCCCGATGGGGACTGGTTTTGCCCAGCTTGCATCTCTAAA
Seq C2 exon
GCAAGCGGCCAGAGTATAAAAATTAAAAAAATTCATGTCAAAGGAAAAAAGACAAATGATTCCAAGAAAACCAAGAAAGGAAACGTCGCCGGGGACACAGAGGATGAAGACTCGGCTTCCACAAGCAGCTCCCTCAAGAGAGGAAGCAAAGAGCTCAAAAAGAGGAAAATGGAGGAAACCACTTCCCTCAACCTGTCAAAAGCAGAAAGCACCACCTCCATTAAGAAACCCAAAAAAGATGAGTCCAGGGACCTGGCTCTCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026987-'98-92,'98-91,100-92=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=0.003 C2=0.674
Domain overlap (PFAM):
C1:
NO
A:
PF0062824=PHD=WD(100=100.0)
C2:
PF0043920=Bromodomain=PU(1.2=1.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGAAGGGCCTTAGCAGAA
R:
CTCTTGAGGGAGCTGCTTGTG
Band lengths:
242-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types