MmuEX6101480 @ mm9
Exon Skipping
Gene
ENSMUSG00000026987 | Baz2b
Description
bromodomain adjacent to zinc finger domain, 2B [Source:MGI Symbol;Acc:MGI:2442782]
Coordinates
chr2:59739783-59745108:-
Coord C1 exon
chr2:59744973-59745108
Coord A exon
chr2:59741216-59741362
Coord C2 exon
chr2:59739783-59740048
Length
147 bp
Sequences
Splice sites
3' ss Seq
GTGCTCTCCTTGTATTGTAGTAC
3' ss Score
6.73
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
Exon sequences
Seq C1 exon
AATTGAAGAGGATATTGCTCCAGGGCTCAGGGTCTGGAGAAGGGCCTTAGCAGAAGCTCGCAGTGCTGCGCAGGTAGCCCTGTGCATCCAGCAGTTACAGAGATCAATAGCATGGGAAAAATCAATTATGAAAGTT
Seq A exon
TACTGCCAGATCTGTCGGAAGGGCGACAATGAAGAGCTGCTTCTACTCTGCGACGGCTGTGACAAAGGCTGCCACACCTACTGCCACAGGCCCAAGATTACAACTATCCCCGATGGGGACTGGTTTTGCCCAGCTTGCATCTCTAAA
Seq C2 exon
GCAAGCGGCCAGAGTATAAAAATTAAAAAAATTCATGTCAAAGGAAAAAAGACAAATGATTCCAAGAAAACCAAGAAAGGAAACGTCGCCGGGGACACAGAGGATGAAGACTCGGCTTCCACAAGCAGCTCCCTCAAGAGAGGAAGCAAAGAGCTCAAAAAGAGGAAAATGGAGGAAACCACTTCCCTCAACCTGTCAAAAGCAGAAAGCACCACCTCCATTAAGAAACCCAAAAAAGATGAGTCCAGGGACCTGGCTCTCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026987-'65-56,'65-55,67-56=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=0.004 C2=0.674
Domain overlap (PFAM):
C1:
NO
A:
PF0062824=PHD=WD(100=100.0)
C2:
PF0043920=Bromodomain=PU(1.2=1.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGAAGGGCCTTAGCAGAA
R:
CTCTTGAGGGAGCTGCTTGTG
Band lengths:
242-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: