BtaEX6022174 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017840 | BAZ2A
Description
bromodomain adjacent to zinc finger domain, 2A [Source:HGNC Symbol;Acc:HGNC:962]
Coordinates
chr5:57155525-57156819:+
Coord C1 exon
chr5:57155525-57156177
Coord A exon
chr5:57156339-57156561
Coord C2 exon
chr5:57156664-57156819
Length
223 bp
Sequences
Splice sites
3' ss Seq
ATGTTTCATCTCATTCATAGGTG
3' ss Score
9.11
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
CTAAGCCTGGCTCTATGCAGCCTAGGCACTTGAAATCTCATTCCAAGGGTCAAGGTTCAGAAGAGCCTCAGACCCAGCTTCAGCCTGAGACTCAGTCCCATCCTCAGCTTCAGGCTCATGCCCAGCCCCAGCTTCAGTCCCATCCTCACACTCATAATGGGTTCCTGGAGCCAGAAGGCTCCCCATTGTCTCTGGGTCAGAGCCAGCATGACCTCAGCCAGTCAGCCTTCCTGTCTTGGCTGAGCCAGACTCAGAACCATGGCTCCCTGCTGAGCAGCTCAGTCCTCACGCCTGATAGCAGTCCCGGAAAACTGGACCCAGCCCCATCACATGCCCCAGAGGAGCCAGAACCTGACGAGACAGAAGCCAGCCCTGATTCTCAAGCTCCCTGGTTTAATTTCTCAGCCCAGATGCCCTGCAATGCTGCCCCTACACCACCCCCTGCAGTTTCTGAGGACCAGCCCACTCTTTCCCCTCAGCTACCTGCTTCTTCCAAGCCA
Seq A exon
GTGAGTAGAGCCAGTGCTGCCAACGCCTATTCTCCAGGGCCATTCTCTTCTACTCCTTTGCTGGGCATGGCTCATAAAAGGCAAGCAGGAGATCCTGGAGAAACACCACAGAGCCCCACAGGGCAAGGACAGCCAAAACGAAGAGGGAGACCTCCCAGTAAGTTCTTCAAACAGATGGAGCAGCGCTATCTAACCCAGCTGACAGCCCAGCCTGTCCCACCTG
Seq C2 exon
AGATGCGCTCTGGCTGGTGGTGGATCCGAGATCCTGAGACATTGGATGCCACGCTCAAGGCCTTGCACCCCCGAGGCATCCGAGAGAAAGCACTTCACAAACACCTAAACAAGCACAGGGACTTCTTACAGGAAGTCTGCCTACGGCCCTCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017840-'31-38,'31-37,33-38=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.991 A=0.907 C2=0.132
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF156141=WHIM3=WD(100=79.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGCAGTCCCGGAAAACTGGA
R:
GTGCTTTCTCTCGGATGCCTC
Band lengths:
298-521
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]