DreEX6079019 @ danRer10
Exon Skipping
Gene
ENSDARG00000102974 | baz2a
Description
bromodomain adjacent to zinc finger domain, 2A [Source:ZFIN;Acc:ZDB-GENE-041010-202]
Coordinates
chr23:6758007-6761129:-
Coord C1 exon
chr23:6760507-6761129
Coord A exon
chr23:6760198-6760429
Coord C2 exon
chr23:6758007-6758162
Length
232 bp
Sequences
Splice sites
3' ss Seq
TTTTCTCTTCTCGTCCTCAGGTT
3' ss Score
12.58
5' ss Seq
TAGGTGAGC
5' ss Score
7.96
Exon sequences
Seq C1 exon
AAGGGTCTCGGCTTTCCCTCACAGATCTGGATGCTCTTCCTGGCGAGGCGTCTCTGATGAGCACCCCCAGAGGACGGGGGCGTCCACGGAAGATCAAACCGGAGGTTGAGCTTCATCTGCGCACCGCCAAGAACCGCCGGCGCCGCCGCAGCAGCAGATCGGCAGGTGAAGATTCAGGCCTGAGTTCTCCGTTGCAGGATCTCCCTCTACCTGCTCTCCAGGCCTCCGTGAAGCAACCGCAGGATGACGAGGCTGACGCTAGTGCACCGATCGTAGCCTCTGGAGCCGGTCAGGGTGAAGACAACAGCCAGCCGGAGGACAGCATGCGGGAGCAGGCAGAGAAACGAGGCCAGTGGTTCAATCTGTTGCCTAAAGAGCCGTGTGATGAAACGTCCCTCTCTCAGCCATGTGAAAACACACCTGCATCCGCTGACGGCGCTCCAGCACCCGTCAATGGTGACCTGCTGACCGCAGATCCAGCACAGCCCCTGAAACAAGAG
Seq A exon
GTTACAACAGAAGCACTTCCTCTTACATTTCCACTTCCGGTTTCTGTTCCCGTTCCTCTGTCGAGCTCTGCCCCGGCTCCTCGTGGCAGACGGCGCAGGAGAGGCAGCGGGCCCTCCCGAGTGCACTCTAGAACCGGCACGGCCAAACGGCGTGGCAGACCTCCCTCCAAACTCTTCCAGGAGGTCCAGCTCAAGTACTTCACTCAACTGGTGGTCCGACCTATTCCGTTAG
Seq C2 exon
AGATGGTGAAGGGCTGGTGGTGGATCAGAGAACCAGAGGAGCTGACGGCCATTCTGAGCGCTCTTCACCCGCGGGGCATTCGAGAGAAGATGCTTCACAAACACCTCAGTAAACACATGGAGTATCTAGCCGAGGTCTGCACACGCTCTGTAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102974-'29-36,'29-33,30-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.895 A=0.558 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF156141=WHIM3=WD(100=73.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTTGCCTAAAGAGCCGTGT
R:
TTTACAGAGCGTGTGCAGACC
Band lengths:
292-524
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]