RnoEX6030139 @ rn6
Exon Skipping
Gene
ENSRNOG00000053881 | Baz2a
Description
bromodomain adjacent to zinc finger domain, 2A [Source:RGD Symbol;Acc:1305037]
Coordinates
chr7:2544500-2545772:+
Coord C1 exon
chr7:2544500-2545161
Coord A exon
chr7:2545276-2545498
Coord C2 exon
chr7:2545617-2545772
Length
223 bp
Sequences
Splice sites
3' ss Seq
TCATGTCTTCTGATTTGTAGATG
3' ss Score
7.45
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
CTCTGCAGCCTCAGCACCTTAAGTCCACCATTAGAGAACATGATTCAGAACAAGCCCAGTCTCAAGCTCACCCAAGAGCTCAGCCTCAGCCCCAGCCTCAGCCCCAGCCTCAGCCTCAGCCTCAGACTCCTATCCAGCCTCATCTTCAGTCAAGTAACGGGTTCCTAGAACCGGAAGGTTCCCCTTTCTCTCTGGGTCAGAGCCAGCACGACCTCAGCCAGTCTGCCTTCCTGTCTTGGCTGAGCCAGACTCAGAGCCACAACTCCCTGTTGAGCAGCTCAGTCCTCACGCCTGATAGCAGCCCCGGAAAATTAGACTCTGCTCCATCTCAGTCCTTAGAGGAGCCAGAGCCTGATGAGACACAACCCTGCCCTGGTCCTCAAGGTCCGTGGTTTAACTTCTCAGCCCAGATACCCTGTGATGCTGCTCCTACACCACCTCCTGCAGTGTCTGAGGACCAACCTACTCCCTCCCTCCAGCTGCCTGCCTCCTCTAAACCA
Seq A exon
ATGAATACACCAGGTGCTGCCAATCCTTGTTCTCCAGTGCAGCTTTCTTTCACCCACTTACCTGGAGGGGGCCCTAAGAGGCTATCTGGGGACTCTGAAGAAATACCACAGAGTCCCACAGGGCTGGGACAACCAAAACGGAGAGGGAGACCTCCTAGCAAGTTCTTCAAGCAGGTGGAGCAACATTACTTAACCCAGCTGACAGCCCAGCCTATCCCCCCTG
Seq C2 exon
ATATGTGCTCAGGCTGGTGGTGGATCCGAGATCCTGAGACACTGGATGTCCTGCTCAAGGCGCTGCATCCCCGAGGCATCCGGGAGAAGGCGCTTCACAAACATCTTAGTAAGCACAAGGACTTTTTGCAGGAGGTTTGTTTGCAGCCCTTAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053881-'27-40,'27-39,30-40=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.991 A=0.800 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF156141=WHIM3=WD(100=79.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGAGCCACAACTCCCTGTT
R:
CCAGTGTCTCAGGATCTCGGA
Band lengths:
295-518
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]