MmuEX6052074 @ mm10
Exon Skipping
Gene
ENSMUSG00000040054 | Baz2a
Description
bromodomain adjacent to zinc finger domain, 2A [Source:MGI Symbol;Acc:MGI:2151152]
Coordinates
chr10:128123024-128124262:+
Coord C1 exon
chr10:128123024-128123655
Coord A exon
chr10:128123766-128123988
Coord C2 exon
chr10:128124107-128124262
Length
223 bp
Sequences
Splice sites
3' ss Seq
CCTTCTTGTCTTCTTTGTAGATG
3' ss Score
10.57
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
GAGGCCGACCTCGAAAACCTAAGCCTGGGTCTCTGCAGCCTCAGCACCTTCAGTCCACCATTAGGGAATGTGATTCAGAGCAAGCCCAGACTCAAGTTCACCCAGAACCCCAGCCTCAGCTTCAGGCCCCTACCCAGCCCCATCTTCAGCCAAGTAGTGGGTTCCTAGAGCCAGAAGGTTCCCCTTTCTCTCTGGGTCAGAGCCAGCATGACCTCAGCCAGTCTGCCTTCTTGTCTTGGCTGAGCCAGACTCAGAGCCACAACTCCCTGTTGAGCAGCTCAGTCCTCACGCCGGACAGCAGCCCAGGGAAACTAGACTCTGCTCCGTCTCAGTCCTTGGAGGAGCCCGAGCCTGATGAGGCTCAGTCCTGCCCTGGTCCTCAAGGTCCCTGGTTTAACTTCTCAGCCCAGATACCCTGTGATGCTGCTCCTACACCACCTCCTGCAGTCTCTGAGGACCAACCTACTCCCTCCCTCCAGCTGCTGGCCTCCTCTAAACCA
Seq A exon
ATGAATACACCCGGTGCTGCCAATCCTTGTTCCCCAGTGCAGCTCTCTTCCACTCACTTGCCTGGAGGGACCCCTAAGAGGCTATCAGGGGACTCTGAAGAAATGTCACAGAGTCCCACTGGGCTGGGGCAACCAAAGCGGAGGGGGAGACCCCCTAGCAAGTTCTTCAAGCAGGTGGAGCAGCATTACTTAACCCAGCTGACAGCCCAGCCTATCCCCCCTG
Seq C2 exon
AGATGTGCTCGGGCTGGTGGTGGATCCGAGACCCTGAGACACTGGATGTCCTGCTCAAGGCACTGCATCCCCGAGGCATCCGGGAGAAGGCGCTTCACAAACATCTTAGCAAGCACAAGGACTTTTTGCAGGAAGTTTGTTTACAGCCCTTAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040054-'36-65,'36-55,42-65=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.972 A=0.800 C2=0.019
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF156141=WHIM3=WD(100=79.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGAGCCACAACTCCCTGTT
R:
CAGTGTCTCAGGGTCTCGGAT
Band lengths:
294-517
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types