BtaEX6022182 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017840 | BAZ2A
Description
bromodomain adjacent to zinc finger domain, 2A [Source:HGNC Symbol;Acc:HGNC:962]
Coordinates
chr5:57151746-57152615:+
Coord C1 exon
chr5:57151746-57151811
Coord A exon
chr5:57151992-57152225
Coord C2 exon
chr5:57152361-57152615
Length
234 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTCTTGGGTGGGTAGGCT
3' ss Score
5.44
5' ss Seq
CAGGTAGTG
5' ss Score
6.13
Exon sequences
Seq C1 exon
GCCAAAAACAAGAGGAAACAAGAGACCAAGAGCTTAAAGCAGAAGGAAGCCAAGAAGAAATCCAAG
Seq A exon
GCTGAGAAGGAGAAGGTAAAAACAAAGCAGGAAAAACTGAAGGAAAAAGTCAAGAGGGAGAAGAAGGAGAAGGTAAAAATGAAGGAAAAGGAGGAGGTGGCCAAGACCAAGCCAACGGGTAAAGCAGATAAAGTGCTGGCCACACAGAGGCGCTTGGAGGAGCGGCAGAGGCAGCAGATGATCTTGGAGGAGATGAAGAAGCCCACAGAGGACATGTGTCTGACTGACCACCAG
Seq C2 exon
CCGCTGCCTGACTTCTCACGCATCCCTGGTCTGATCCTGCCTAGTGGGGCCTTCTCAGACTGCTTGACCATTGTGGAGTTCCTGCACAGCTTCGGCAAGGTGCTGGGCTTTGACCCTGCCAAAGATGTCCCTAGTCTGGGGGTCCTGCAGGAGGGGCTCCTGTGTCAAGGCGACAGCTTGGGCGAGGTGCAGGATCTCCTGGTGCGACTCCTGAGAGCAGCTCTCTGTGACCCTGGCCTGCCCTCCTATTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017840-'22-26,'22-25,23-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.949 C2=0.000
Domain overlap (PFAM):
C1:
PF0449910=SAPS=FE(9.4=100)
A:
PF0449910=SAPS=FE(34.4=100)
C2:
PF0449910=SAPS=PD(29.9=78.8),PF0279112=DDT=WD(100=74.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAAACAAGAGACCAAGAGCT
R:
GACAATAGGAGGGCAGGCCAG
Band lengths:
307-541
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]