DreEX6079013 @ danRer10
Exon Skipping
Gene
ENSDARG00000102974 | baz2a
Description
bromodomain adjacent to zinc finger domain, 2A [Source:ZFIN;Acc:ZDB-GENE-041010-202]
Coordinates
chr23:6770745-6773811:-
Coord C1 exon
chr23:6773746-6773811
Coord A exon
chr23:6773058-6773438
Coord C2 exon
chr23:6770745-6770999
Length
381 bp
Sequences
Splice sites
3' ss Seq
TTCCTGCCATGTTTGAGCAGTTG
3' ss Score
4.8
5' ss Seq
ACGGTGAGC
5' ss Score
9.44
Exon sequences
Seq C1 exon
GCAAGAATGAAAAGAAAGGAAGATGCAAAGAATAAGAAGATGCGGCTGGAGAAACGAAAGGCTAAA
Seq A exon
TTGGAGAAATCCAAAGAGCAGGGACTGGATAATGGGGACCTCTCACTGCCATTCAGCCAGTCGTCTGAAAGCACCCTGTCGGCTTCAGAGGGGCCCAAGAAGCCCGGGCGCAGGAGGAAGGTTGTAGTACCTGCAGCAGAAACCTTCGACCCGGAGCAGGCCAGCCCAATCAAAACTGTGGCCCGAGCCCGCAGCAAGGCTAAGGCTTTGGCAAAGGCCCAGGCACAAGCGGAGGCAGAGGCACGGGCTGCACTGGCGGCAAAGAGAGCGGCGGAGAGGAGAGCACAGGCTCAGAGACGTATGGAGGAGAGGAAGAAACAGCAGATGCTCTTAGAGGAGATGAAGAAGCCTGCAGAGGACATGTGTCTACCCGACCACACG
Seq C2 exon
CCTCTGCCTCCACTAACACGGATACCAGGACTGAAGCTCTCGGGTTTGGCTTTCTCTAATTGTTTACGGGTGGTTGAGTTCCTCCATGGCTATGGCAAGATTCTGGGACTTCAGGTGCCCAAGGACATCCCCAGTCTTATTACCCTGCAGGAGGGGCTTCTGGGCATGGAAAAGAGCCAGGGTGAACTGCTGGATCTGCTCATCAAACTGGTGGAGTCCGCGCTGCATGATCCTGGACTGCCCTCGTATTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102974-'17-20,'17-17,18-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.915 A=0.973 C2=0.012
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0279112=DDT=WD(100=74.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAGAATGAAAAGAAAGGAAGATGC
R:
ATAATACGAGGGCAGTCCAGGA
Band lengths:
318-699
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]