RnoEX0014166 @ rn6
Exon Skipping
Gene
ENSRNOG00000053881 | Baz2a
Description
bromodomain adjacent to zinc finger domain, 2A [Source:RGD Symbol;Acc:1305037]
Coordinates
chr7:2539594-2540507:+
Coord C1 exon
chr7:2539594-2539659
Coord A exon
chr7:2539920-2540135
Coord C2 exon
chr7:2540253-2540507
Length
216 bp
Sequences
Splice sites
3' ss Seq
CTTTCTCCCTGGGTGGGTAGGCT
3' ss Score
5.31
5' ss Seq
CAGGTATTA
5' ss Score
7.26
Exon sequences
Seq C1 exon
GCCAGAAACAAGAGGAAGCAAGACACCAAGAACTCAAAGCCGAAGGACACTAAGAGGAAGTTCAAG
Seq A exon
GCTGAGAAAGAGAAGATGAAGACAAAGCAGGAGAAGCTGAAGGAAAAGGTGAAGAGGGAAAAGAAAGAAAAGGTAAAAGTGAAGGGAAAGGAAGAGCCCAGAGCCAGGCCATCCTGTAGAGCTACACAGAGGCGACTGGAGGAGCGGCAGAGGCAGCAGGTCATCTTGGAGGAGATGAAGAAGCCCACGGAGGATATGTGTCTGGCTGACCACCAG
Seq C2 exon
CCCCTGCCTGACTTCACACGCATCCCTGGTTTGACACTGTCCAGCAGGGCTTTCTCAGATTGCTTGACCATCGTGGAGTTCCTGCACAGTTTTGGCAAAGTGCTAGGCTTTGACCTTACCAAAGATGTTCCTAGTCTCGGAGTCCTGCAGGAGGGGCTCTTATGTCAAGGTGACAGCTTGGACAAAGTGCAGGACCTGCTGGTCCGGCTCCTGAAGGCTGCACTTCACGATCCTGGTTTGCCCTCCTACTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053881-'19-28,'19-25,20-28
Average complexity
S
Mappability confidence:
90%=75=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.944 C2=0.012
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0279112=DDT=WD(100=74.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACCAAGAACTCAAAGCCGA
R:
TGACAGTAGGAGGGCAAACCA
Band lengths:
298-514
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]