GgaEX0019019 @ galGal3
Exon Skipping
Gene
ENSGALG00000012579 | BAZ2B
Description
NA
Coordinates
chr7:38213453-38218891:-
Coord C1 exon
chr7:38218826-38218891
Coord A exon
chr7:38215002-38215142
Coord C2 exon
chr7:38213453-38213707
Length
141 bp
Sequences
Splice sites
3' ss Seq
CTCTTTTAATTCTCCTAAAGGAA
3' ss Score
7.12
5' ss Seq
AAGGTAGTT
5' ss Score
6.44
Exon sequences
Seq C1 exon
GAACGAGAGAGGAGAAGACAGCATATGATGCTTATGAAAGCCATGGAAGCACGTAAAAAGGCGGAA
Seq A exon
GAAAAAGAGCGATTAAAGCAAGAGAAACGTGATGAAAAAAGGTTAAATAAAGAACGTAAACTAGAACAGCGAAGACTGGAACTAGAAATGGCAAAGGAGCTGAAGAAGCCTAATGAAGATATGTGCTTAGCAGACCAGAAG
Seq C2 exon
GCTTTGCCAGAGCTGCCTCGCATCCCAGGCCTTGTTCTGTCTGGAAGCACATTTTCAGATTGTCTCATGATAGTACAGTTCTTGCGTAACTTTGGTAAAGTTCTTGGCTTTGACGTGAATACAGATGTGCCTTCCCTGAGTACTCTTCAAGAAGGTTTGCTGAACATAGGGGACAGCAGAGGAGAAGTACAGGACTTGCTTGTAAAGCTTGTCACTGCAGCTGTTTGTGATCCAGGACTTGTTACAGGATACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012579_MULTIEX1-16/23=15-17
Average complexity
S*
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.698 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0279112=DDT=WD(100=74.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAAAGCCATGGAAGCACGT
R:
ACAGCTGCAGTGACAAGCTTT
Band lengths:
257-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]