DreEX6020951 @ danRer10
Exon Skipping
Gene
ENSDARG00000057782 | baz2ba
Description
bromodomain adjacent to zinc finger domain, 2Ba [Source:ZFIN;Acc:ZDB-GENE-070615-37]
Coordinates
chr6:11738296-11740577:+
Coord C1 exon
chr6:11738296-11738361
Coord A exon
chr6:11738616-11738756
Coord C2 exon
chr6:11740326-11740577
Length
141 bp
Sequences
Splice sites
3' ss Seq
CTCTTTCTTCCACCCCGCAGGAA
3' ss Score
11.31
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
GAGAGGGAGAGGAGGAGACAGCACGTTATGCTAATGAAAGCTGTGGAGGCTCGGAAAAAAGCTGAG
Seq A exon
GAACGCGAACGCCTCAGGCAGGAGAAACGTGACGAGAAACGGCTCAACAAAGAGCGCAAAATGGAGCTCCGGAGGCTGGAGCTGGAGATGATCCGTGAGATGAAGAAGCCAAATGAAGACATGTGTTTGACGGATCACAAG
Seq C2 exon
CCGCTTCCGGGGGTTCCTCGTATCCCGGGTCTGGTTCTGCCTGGCAGTGTGTTTTCAGATTGCCTGATGGTGGTGCAGTTCCTGCGGAGCTTTGGGAAGGTGTTGGGCCTGGACTCCTCTGAGTTGCCCACTCTGGGGATCCTGCAGGAGGGGCTGCTCAACCTGGGCAACAGCATGGGCCAGGTGCAGGACCTGCTGGTGAGACTGCTCTCGTCTGCGGTGTCTGACCCAGGACTGCCTCAAGGACACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057782-'31-27,'31-26,32-27=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.773 A=0.702 C2=0.036
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0279112=DDT=WD(100=73.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGAAAGCTGTGGAGGCTCG
R:
AGAGCAGTCTCACCAGCAGG
Band lengths:
245-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]