RnoEX6016963 @ rn6
Exon Skipping
Gene
ENSRNOG00000056984 | Baz2b
Description
bromodomain adjacent to zinc finger domain, 2B [Source:RGD Symbol;Acc:1309801]
Coordinates
chr3:45996379-46003286:-
Coord C1 exon
chr3:46003221-46003286
Coord A exon
chr3:45998352-45998492
Coord C2 exon
chr3:45996379-45996633
Length
141 bp
Sequences
Splice sites
3' ss Seq
TGCATGATTTTCTCTTTAAGGAA
3' ss Score
9.31
5' ss Seq
AAGGTGACT
5' ss Score
6.64
Exon sequences
Seq C1 exon
GAACGGGAGCGAAGGCGACAGCATATGATGCTTATGAAAGCTATGGAAGCTCGTAAAAAAGCAGAA
Seq A exon
GAAAAAGAACGATTGAAGCAAGAGAAACGTGATGAGAAAAGATTGAATAAGGAACGCAAACTAGAGCAACGGAGATTGGAGTTAGAAATGGCGAAGGAGCTTAAGAAACCCAAGGAAGACATGTGCTTAGCAGACCAAAAG
Seq C2 exon
CCCTTGCCAGAGTGGCCTCGCATCCCGGGACTTGTGCTCTCTGGAACCACATTTTCAGACTGTCTCATGGTGGTGCAGTTCTTACGAAACTTTGGTAAAGTTTTGGGCTTTGATGTGAATATTGATGTTCCAAACCTCAGTGTTCTTCAAGAGGGATTGCTAAATATAGGGGACAGCATGGGTGAAGTACAAGACTTGCTTGTGAGGCTCCTCTCAGCTGCTGTATGTGATCCAGGTCTAATTACAGGATACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056984-'40-40,'40-39,41-40=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.681 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0279112=DDT=WD(100=74.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACGGGAGCGAAGGCGA
R:
TTCACCCATGCTGTCCCCTAT
Band lengths:
252-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]