HsaEX6016156 @ hg38
Exon Skipping
Gene
ENSG00000123636 | BAZ2B
Description
bromodomain adjacent to zinc finger domain 2B [Source:HGNC Symbol;Acc:HGNC:963]
Coordinates
chr2:159386353-159395834:-
Coord C1 exon
chr2:159395769-159395834
Coord A exon
chr2:159389345-159389485
Coord C2 exon
chr2:159386353-159386607
Length
141 bp
Sequences
Splice sites
3' ss Seq
TACATGGTTTTCTTTTTAAGGAA
3' ss Score
9.5
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
GAACGAGAGCGAAGGCGACAACACATGATGCTTATGAAAGCTATGGAAGCTCGTAAAAAAGCAGAA
Seq A exon
GAAAAAGAGCGGTTGAAACAAGAAAAACGTGATGAGAAAAGATTAAATAAAGAGCGTAAACTAGAGCAGCGAAGATTAGAATTAGAAATGGCAAAGGAACTAAAGAAGCCTAATGAAGACATGTGCTTAGCAGACCAAAAG
Seq C2 exon
CCTTTGCCAGAGTTGCCTCGTATTCCAGGACTTGTTCTCTCTGGAAGTACATTTTCAGACTGTCTCATGGTGGTGCAGTTCTTACGAAACTTTGGTAAAGTTTTGGGCTTTGATGTGAATATTGATGTTCCAAACCTGAGTGTTCTTCAAGAGGGATTGCTAAATATAGGGGACAGCATGGGTGAAGTACAAGACTTGCTTGTGAGGCTCCTCTCAGCTGCTGTATGTGATCCAGGTCTAATAACAGGATACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000123636-'90-74,'90-73,95-74
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.771 C2=0.002
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0279112=DDT=WD(100=74.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCGACAACACATGATGCTT
R:
GTACTTCACCCATGCTGTCCC
Band lengths:
244-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains