HsaEX6016156 @ hg19
Exon Skipping
Gene
ENSG00000123636 | BAZ2B
Description
bromodomain adjacent to zinc finger domain, 2B [Source:HGNC Symbol;Acc:963]
Coordinates
chr2:160242864-160252345:-
Coord C1 exon
chr2:160252280-160252345
Coord A exon
chr2:160245856-160245996
Coord C2 exon
chr2:160242864-160243118
Length
141 bp
Sequences
Splice sites
3' ss Seq
TACATGGTTTTCTTTTTAAGGAA
3' ss Score
9.5
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
GAACGAGAGCGAAGGCGACAACACATGATGCTTATGAAAGCTATGGAAGCTCGTAAAAAAGCAGAA
Seq A exon
GAAAAAGAGCGGTTGAAACAAGAAAAACGTGATGAGAAAAGATTAAATAAAGAGCGTAAACTAGAGCAGCGAAGATTAGAATTAGAAATGGCAAAGGAACTAAAGAAGCCTAATGAAGACATGTGCTTAGCAGACCAAAAG
Seq C2 exon
CCTTTGCCAGAGTTGCCTCGTATTCCAGGACTTGTTCTCTCTGGAAGTACATTTTCAGACTGTCTCATGGTGGTGCAGTTCTTACGAAACTTTGGTAAAGTTTTGGGCTTTGATGTGAATATTGATGTTCCAAACCTGAGTGTTCTTCAAGAGGGATTGCTAAATATAGGGGACAGCATGGGTGAAGTACAAGACTTGCTTGTGAGGCTCCTCTCAGCTGCTGTATGTGATCCAGGTCTAATAACAGGATACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000123636-'36-38,'36-37,38-38=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.769 C2=0.001
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0279112=DDT=WD(100=74.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCGACAACACATGATGCTT
R:
GTACTTCACCCATGCTGTCCC
Band lengths:
244-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)