BtaEX6009629 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020654 | BAZ2B
Description
bromodomain adjacent to zinc finger domain, 2B [Source:HGNC Symbol;Acc:HGNC:963]
Coordinates
chr2:37078234-37106060:+
Coord C1 exon
chr2:37078234-37078299
Coord A exon
chr2:37101561-37101701
Coord C2 exon
chr2:37105806-37106060
Length
141 bp
Sequences
Splice sites
3' ss Seq
GACATGGTTTTCTTTTTAAGGAA
3' ss Score
9.47
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
GAACGAGAGAGAAGGCGACAACATATGATGCTTATGAAAGCTATGGAAGCTCGTAAAAAGGCAGAA
Seq A exon
GAAAAAGAACGATTGAAGCAAGAAAAACGTGATGAGAAAAGATTAAATAAAGAACGTAAACTAGAGCAACGAAGATTAGAATTAGAAATGGCAAAGGAACTAAAGAAGCCTAATGAAGACATGTGCTTAGCAGACCAAAAG
Seq C2 exon
CCTTTGCCAGAGTTGCCTCGTATTCCAGGACTTGTTCTCTCTGGAAGTACATTTTCAGACTGTCTCATGGTGGTGCAGTTCTTACGAAACTTTGGTAAAGTTTTGGGCTTTGATGTGAATATTGATGTTCCAAACCTGAGTGTTCTTCAAGAGGGATTGCTAAATATAGGGGACAGCATGGGTGAAGTACAAGACTTGCTTGTGAGGCTCCTCTCAGCTGCTGTATGTGATCCAGGTCTAATTACAGGATACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020654-'36-42,'36-41,40-42=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.693 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0279112=DDT=WD(100=74.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAGAGAGAAGGCGACAACA
R:
TTCACCCATGCTGTCCCCTAT
Band lengths:
250-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]