BtaEX6022191 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017840 | BAZ2A
Description
bromodomain adjacent to zinc finger domain, 2A [Source:HGNC Symbol;Acc:HGNC:962]
Coordinates
chr5:57142905-57146279:+
Coord C1 exon
chr5:57142905-57143042
Coord A exon
chr5:57144635-57145228
Coord C2 exon
chr5:57146094-57146279
Length
594 bp
Sequences
Splice sites
3' ss Seq
TTTCCCTCCTTCTCTGCCAGGTT
3' ss Score
11.85
5' ss Seq
CAGGTATAA
5' ss Score
7.46
Exon sequences
Seq C1 exon
AAATGGAGGCAAACGACCATTTTAACTTTACTGGCCTTCCCCCTGCACCTGCTGCCTCAGGACTGAAACCCTCTCCCTCCTCAGGGGAGGGGCTCTACACTAACGGGTCTCCCATGAACTTCCCCCAGCAAGGGAAAA
Seq A exon
GTTTGAATGGGGATGTGAATGTTAATGGCTTATCTACTGTATCTCACACTACTACTTCAGGGATTTTGAACTCTGCTCCCCACTCCTCCAGCACCTCACACCTCCATCACCCCAACGTGGCCTACGACTGTCTCTGGAACTACTCACAGTACCCATCTGCCAATCCTGGCAGCAACCTCAAGGACCCACCCCTTCTCTCCCAGTTCTCGGGGGGACAGTACCCACTCAACGGCATCCTTGGGGGCAGCCGGCAACCTTCATCCCCAAGTCACAACACTAACCTTCGGGCTGGGAGCCAAGAGTTCTGGGCCAACGGTACCCAGAGTCCCATGGGGCTTAACTTCGATTCACAGGAACTCTATGATTCCTTTCCCGACCAGAATTTTGAGGTGATGCCCAATGGACCCCCTAGTTTTTTCACCTCCCCACAGACTTCTCCTATGTTGGGATCCAGCATCCAGACCTTTGCACCCTCCCAGGAGGTAGGCAGCGGTATCCATCCTGATGAGGCAGCAGAAAAGGAACTTACTTCCGTCGTGACAGAGAATGGTGCTGGCTTAGTAGGCAGCCTGGAGCTGGAAGAAGAGCAGCCAG
Seq C2 exon
AACTAAAGATGTGTGGCTACAACGGCTCCGTCCCTTCTGTGGAATCATTACACCAGGAGGTCTCAGTCTTGGTCCCTGATCCCACAGTGAGCTGCTTAGATGATCCTTCACATCTTCCTGATCAACTGGAAGACACTCCAATCCTCAGTGAAGTCTCTCTCGAGCCCTTCAACACTCTGGCACCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017840-'7-9,'7-4,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.829 C2=0.825
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATGGAGGCAAACGACCATT
R:
CCAGAGTGTTGAAGGGCTCGA
Band lengths:
318-912
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]