DreEX6079007 @ danRer10
Exon Skipping
Gene
ENSDARG00000102974 | baz2a
Description
bromodomain adjacent to zinc finger domain, 2A [Source:ZFIN;Acc:ZDB-GENE-041010-202]
Coordinates
chr23:6781695-6788129:-
Coord C1 exon
chr23:6788000-6788129
Coord A exon
chr23:6785217-6786023
Coord C2 exon
chr23:6781695-6783323
Length
807 bp
Sequences
Splice sites
3' ss Seq
TGATGCCCCTCATGACACAGACC
3' ss Score
5.8
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
Exon sequences
Seq C1 exon
ATGGAAGCAAATAACCATTTTAACTATGGGCCTCACTCTTCTGTGTCCGCTAACTCAGGACTGAAGCATTCCTCAGGAGATTCTCTCTATACTAACGGGTCCTCCATGAGCTTCCCCCAGCAAGGGAAAA
Seq A exon
ACCTGAATGGCGAAATGAATGTGAATGGCATCACTACTGCAGGTGGGAGCAGCCAGCCTGGCACCCTCCCTCCCTCTTCTTCTTATCCTCATATGAGCAACCATCACCTCCCAGGCAGCATTGGATTTGACTATCTGTGGGGCCAGTCACAGTTCAGCCCAGCGATGGGGCCTGTACCTCCCCACGGGTTGCACCAGAAACCAGGCTCACAACCACAGCAGCCTCAGCAGCAGCAGCACCACTTCCAGGGGCATGGACCCTACCAAGTCAACGGCAGCATGGGACCCTCTCGGCAGCCCCTGGGCTCTGGGTTGCAGTATTGGGGAAGGGGTAATCCTGGGCCGCAGCAGCAGGGGGGCTCCTCGATGTCCATGGGATTTAACTCTCATAGCATATATGGGTCATATCCCAACCAGGCTCATCAGAGCATCCCAGTGTCCCAGCATCACCAGCAGACTCCAGCCTTGCAGAACCAGTCTGCAGCATCACATCATCTCCAACACCCCTCGCATCTCCACCCACCTCAACACCAGCAGCAGCAACAACAACAACAACAGCAGCAGCAGCATTATACTATAATGCCTAATGGAATGCCCTTTTACCAGCATGCACCACACCAGTCCCAACCGCAGACCCAGACCCAGTCTCAAGCCCAGGCTCAAGTGGTACAGTCTGTCGGGCAGAGCTTTACGCCTCCACAAGGAAGCCCTCAGCACCATCATGTGGGCAGTGGAGGAGGCAGAAGCAGTCCACACCATGTGTCCATCCCAATGAGTTCCCCTTCTCCTAAGAGCAGAGAGATGCAAG
Seq C2 exon
TTCACATGAATGAGTCCTTTAAAGAAACCGATAAAGGCTTCAATGGAGTTGAGAGAAGCTCTGTACCCCAGCGTCTACCCAGAACTGAAGGTTTTCCTGTAAAGGCCCCTGGTTCCTCTACTGACTTTAACCAGGGTGTGCAGCATCCATCTATGGATCTGGAAGAACCTGCACAACCACATCAGGACATGAGAGCTGCTCTAAAGGAGCAAAGTTCCTCCCCCATTGCTGGACCTCCTCAACAGCTGACTAGTTCTCCTCGTAAAACATCGACCCTCCCTCATCAAGCTGCATCTGGGCAAGATTCACATTCTTCATCAACAGCTTTGGGTGTCTGTGCACACTTATCCGTAACTCCTCCTTCTCCACCACCTCTGATGGTCCAAGTCCAAAAACCAGTCTTCTCAACACCTTTATCAGCTGATGACACTCCTTCAGGAATTGGTACAACTTCAACTTCGTCTTCGAAAATCTCCAGATCTCCACCTGCTGTTTTACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102974-'2-4,'2-3,5-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.949 C2=0.855
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAACGGGTCCTCCATGAGCTT
R:
GAATCTTGCCCAGATGCAGCT
Band lengths:
345-1152
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]