RnoEX0014172 @ rn6
Exon Skipping
Gene
ENSRNOG00000053881 | Baz2a
Description
bromodomain adjacent to zinc finger domain, 2A [Source:RGD Symbol;Acc:1305037]
Coordinates
chr7:2529077-2533240:+
Coord C1 exon
chr7:2529077-2529212
Coord A exon
chr7:2531098-2531691
Coord C2 exon
chr7:2533055-2533240
Length
594 bp
Sequences
Splice sites
3' ss Seq
TTTTCTGTTTTTTCTGCCAGGTT
3' ss Score
11.51
5' ss Seq
CAGGTATAA
5' ss Score
7.46
Exon sequences
Seq C1 exon
ATGGAGGCAAACGACCATTTTAATTTTACTGGCCTTCCTCCTGCACCAGCTGCCTCAGGACTGAAACCCTCTCCTTCCTCAGGGGAGGGCCTCTACACTAACGGGTCTCCCATGAACTTCCCCCAGCAAGGGAAAA
Seq A exon
GTTTGAATGGGGATGTGAATGTTAATGGCTTATCTACTGTATCTCACACTACTACTTCAGGGATTTTGAACTCTGCTCCCCACTCCTCTAGCACCTCACACCTCCATCACCCTAACGTGGCCTACGACTGTCTTTGGAACTACTCACAGTACCCATCTGCCAATCCTGGCAACAACCTCAAGGACCCACCCCTTCTTTCTCAATACCCTGGGGGGCAATACCCGCTCAACGGTATCCTTGGGGGCAGCCAACAACCTTCATCCCCAAGTCACAACACTAATCTTCGAGCTGGGAGCCAAGAGTTCTGGGCCAATGGTACCCAGAGTCCCGTGGGGCTTAACTTCGATTCACAGGAACTGTATGATTCTTTTCCTGACCAGAATTTTGAGGTGATGCCCAATGGACCCCCAAGTTTTTTCACCTCCCCACAGACTTCTCCAATGCTGGGGTCTAGTATCCAGACCTTTGCACCTTCCCAGGGTGTAAGCAGTGACCTCCATCCTGATGAGGCAGCGGAAAAGGAGCTGACCTCAGTTGTGGCAGAAAATGGCACTGGCTTGGTAGGCAGCCTGGAACTGGAGGAAGAGCAGCCAG
Seq C2 exon
AACTAAAGATGTGTGGCTACAATGGTTCTGTCTCCTCTGTGGAGTCTTTGCACCAAGAAGTCTCGGTCCTGGTCCCTGACCCCACAGTGAGCTGTCTGGATGATCCTTCACATCTTCCTGAGCAACTGGAAGACACTCCAATCCTCAGTGAAGACTCCCTCGAGCCCTTTGACTCTCTGGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053881-'6-12,'6-5,7-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.978 A=0.839 C2=0.730
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGAGGCAAACGACCATTTT
R:
CTGCTGCCAGAGAGTCAAAGG
Band lengths:
322-916
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]