MmuEX6052092 @ mm10
Exon Skipping
Gene
ENSMUSG00000040054 | Baz2a
Description
bromodomain adjacent to zinc finger domain, 2A [Source:MGI Symbol;Acc:MGI:2151152]
Coordinates
chr10:128108894-128112767:+
Coord C1 exon
chr10:128108894-128109031
Coord A exon
chr10:128110755-128111348
Coord C2 exon
chr10:128112582-128112767
Length
594 bp
Sequences
Splice sites
3' ss Seq
TTCTGTTTTTTTTCTGCCAGGTT
3' ss Score
10.26
5' ss Seq
CAGGTATAA
5' ss Score
7.46
Exon sequences
Seq C1 exon
AAATGGAGGCAAACGACCATTTTAACTTTACTGGCCTTCCTCCTGCACCAGCTGCCTCAGGACTGAAACCCTCTCCTTCCTCGGGGGAGGGCCTCTACACTAACGGGTCTCCCATGAACTTCCCCCAGCAAGGGAAAA
Seq A exon
GTTTGAATGGGGATGTGAATGTTAATGGCTTATCTACTGTATCTCACACTACTACTTCAGGGATTTTGAACTCTGCTCCCCACTCCTCTAGCACCTCACACCTCCATCACCCTAACGTGGCCTACGACTGTCTTTGGAACTACTCACAGTACCCATCTGCCAATCCTGGCAACAACCTCAAGGACCCACCCCTTCTTTCTCAGTTCCCTGGGGGACAATACCCGCTCAACGGTATCCTTGGGGGCAACCGACAACCTTCATCCCCAAGTCACAACACTAATCTTCGAGCTGGGAGCCAAGAGTTCTGGGCCAATGGTACCCAGAGTCCCATGGGGCTTAACTTCGATTCACAGGAACTGTATGATTCTTTTCCTGATCAGAATTTTGAGGTGATGCCCAATGGACCCCCAAGTTTTTTCACCTCCCCTCAGACTTCTCCAATGTTGGGGTCTAGTATCCAGACCTTTGCACCTTCCCAGGATGTAAGCAGTGACATCCATCCTGATGAAGCAGCAGAAAAGGAGCTGACTTCAGTTGTGGCAGAAAATGGCACTGGCTTGGTAGGCAGCCTGGAGCTGGAGGAAGAGCAGCCAG
Seq C2 exon
AACTAAAGATGTGTGGCTACAATGGTTCTGTCTCCTCTGTGGAGTCTTTACACCAAGAAGTCTCCGTCCTGGTCCCTGATCCCACAGTGAGCTGTCTAGATGATCCTTCACATCTTCCTGATCAACTGGAAGACACTCCAATTCTCAGTGAAGACTCCCTGGAGCCCTTTGACTCTCTGGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040054-'12-17,'12-12,14-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.978 A=0.832 C2=0.683
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGAGGCAAACGACCATTTT
R:
CTGCTGCCAGAGAGTCAAAGG
Band lengths:
322-916
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types