BtaEX6022199 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017830 | RBMS2
Description
Bos taurus RNA binding motif, single stranded interacting protein 2 (RBMS2), mRNA. [Source:RefSeq mRNA;Acc:NM_001034365]
Coordinates
chr5:57167571-57168859:-
Coord C1 exon
chr5:57168749-57168859
Coord A exon
chr5:57168070-57168150
Coord C2 exon
chr5:57167571-57167656
Length
81 bp
Sequences
Splice sites
3' ss Seq
GTCAATGCATCTCATTCCAGTAT
3' ss Score
4.72
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GGTTCAGTTCTGACACCAGGAATGGACCATCCCATTTCTCTCCAGCCTGCCTCCATGGTGGGACCTCTTACCCAGCAGTTGGGCCACCTCTCTCTCAGCAGCACGGGCACG
Seq A exon
TATGTGCCAACAGCTGCAGCTATGCAGGGAGCTTACCTCTCCCAGTACACCCCAGTGCCTTCTTCCAGTGTTTCAGTTGAG
Seq C2 exon
GAGAGTGGCAGCCAGCAAAGTCAAGTGCCGGTGGATGCACCCTCAGAGCATGGCGTCTACTCTTTCCAATTCAACAAGTAACAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017830-'26-23,'26-21,28-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.541 A=0.222 C2=0.500
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGACACCAGGAATGGACCA
R:
TGGAAAGAGTAGACGCCATGC
Band lengths:
171-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]