HsaEX1030889 @ hg38
Exon Skipping
Gene
ENSG00000076067 | RBMS2
Description
RNA binding motif single stranded interacting protein 2 [Source:HGNC Symbol;Acc:HGNC:9909]
Coordinates
chr12:56587554-56589018:+
Coord C1 exon
chr12:56587554-56587664
Coord A exon
chr12:56588294-56588374
Coord C2 exon
chr12:56588932-56589018
Length
81 bp
Sequences
Splice sites
3' ss Seq
GTTGATGTTTCTCTTTCTAGTAT
3' ss Score
7.6
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
GGTTCAGTTCTGACACCAGGGATGGACCATCCCATTTCTCTCCAGCCTGCCTCCATGATGGGACCCCTTACCCAGCAACTGGGCCATCTCTCCCTCAGCAGCACAGGCACG
Seq A exon
TATATGCCGACGGCTGCAGCTATGCAAGGAGCTTACATCTCCCAGTACACCCCTGTGCCTTCTTCCAGTGTTTCAGTCGAG
Seq C2 exon
GAGAGCAGCGGCCAACAGAACCAAGTGGCAGTGGACGCACCCTCAGAGCATGGGGTCTATTCTTTCCAGTTCAACAAGTAACAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000076067-'65-118,'65-117,67-118
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.432 A=0.185 C2=0.481
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTCAGTTCTGACACCAGGG
R:
ATAGACCCCATGCTCTGAGGG
Band lengths:
171-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains