RnoEX0074756 @ rn6
Exon Skipping
Gene
ENSRNOG00000003076 | Rbms2
Description
RNA binding motif, single stranded interacting protein 2 [Source:RGD Symbol;Acc:1304813]
Coordinates
chr7:2554696-2555908:-
Coord C1 exon
chr7:2555798-2555908
Coord A exon
chr7:2555139-2555219
Coord C2 exon
chr7:2554696-2554780
Length
81 bp
Sequences
Splice sites
3' ss Seq
AACCATTGTTTTCTTTCCAGTTC
3' ss Score
8.47
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
GGCTCAGTTCTGACACCAGGGATGGACCACCCCCTCTCTCTCCAGCCTGCCTCCATGATGGGACCTCTTACTCAGCAACTGGGGCACCTGTCACTCAACAGCCTGGGCACG
Seq A exon
TTCATGCCAGCAGCCGCTGCTATGCAAGGAACTTACATCTCCCAGTACCCAGCTGTGCCTTCTTCCAGTGTTTCTGTTGAG
Seq C2 exon
GAGAGCAATGGTCAGCAGAGTCAACTGGCAGTGGAGCCCCCCTCAGACCATGGGGTCTATCCTTTCCAGTTCAGCAAGTAGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003076_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.405 A=0.185 C2=0.538
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGACACCAGGGATGGACC
R:
CTGGAAAGGATAGACCCCATGG
Band lengths:
173-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]