DreEX6090198 @ danRer10
Exon Skipping
Gene
ENSDARG00000044179 | rbms2a
Description
RNA binding motif, single stranded interacting protein 2a [Source:ZFIN;Acc:ZDB-GENE-030912-2]
Coordinates
chr11:1911956-1914757:+
Coord C1 exon
chr11:1911956-1912066
Coord A exon
chr11:1912611-1912688
Coord C2 exon
chr11:1914671-1914757
Length
78 bp
Sequences
Splice sites
3' ss Seq
TCTTGTGTTTTTCTCTTCAGTAT
3' ss Score
9.97
5' ss Seq
GAGGTATGA
5' ss Score
8.55
Exon sequences
Seq C1 exon
GGTGCTCTTTTGACCCAGGCTCTGGATCACCAAATGTCCCTCCAGTCCTCGTCTATGATGGGGCCGTTGACCCAGCAGCTGAGTCACCTGTCCCTCGGCAGCACCGGCACG
Seq A exon
TATATCCCGAACGCAGCTCTGCAGGGCACCTATATCCCTCAGTTCACCGCAGTGCCTCCCTCTAGTGTCTCATTAGAG
Seq C2 exon
GAGAACAGTGGACAGCAGCAGCAGCAGATCACCATCGACACAGCAGCAGAACACAACAACTACTCCTATCAACACAGCAAATGAAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044179-'13-17,'13-16,15-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.297 A=0.269 C2=0.963
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTCTTTTGACCCAGGCTC
R:
TGTTGTGTTCTGCTGCTGTGT
Band lengths:
168-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]