BtaEX6022818 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006010 | STAB2
Description
Bos taurus stabilin 2 (STAB2), mRNA. [Source:RefSeq mRNA;Acc:NM_001206679]
Coordinates
chr5:67680533-67686779:+
Coord C1 exon
chr5:67680533-67680644
Coord A exon
chr5:67683693-67683873
Coord C2 exon
chr5:67686686-67686779
Length
181 bp
Sequences
Splice sites
3' ss Seq
CCCTTTTCCTTCTCCCTCAGCAT
3' ss Score
9.77
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
Exon sequences
Seq C1 exon
TGCACCGACGGCCTTGATGGCAACGGGACGTGTGTTTGCCAGGATGGCTTCCGAGGCACCCAGTGCCAGTTCTGTTCAGACCCCAGTAAATACGGACCTCGGTGTGACACAA
Seq A exon
CATGTCCGTGCATTTTCGGAACGTGTGATAACAGGATTGACAGCGACGGCGCCTGCCTTCCTGGGAGCTGCAGGAACGGCTCTGCGGGGAGATTCTGCCACAAGCAGACCTCAGCCTGTGGGCCCTACGTGCAGTTCTGTCACATCCATGGCACCTGTGAATACAGTGATGGAACGGCAAG
Seq C2 exon
CTGTGTTTGCAAACCAGGATACGAAGGAGATGGAAGCTTCTGTGTGGAGATGGACCCTTGTTCAGGATCAATCCCAGGGGGCTGCAGCCGCTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006010-'22-25,'22-23,23-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(64.5=52.6)
A:
PF129472=EGF_3=PU(58.3=34.4)
C2:
PF129472=EGF_3=PD(38.9=43.8),PF129472=EGF_3=PU(22.9=25.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCGACGGCCTTGATGG
R:
CCCCTGGGATTGATCCTGAAC
Band lengths:
190-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]