DreEX6001349 @ danRer10
Exon Skipping
Gene
ENSDARG00000045748 | stab2
Description
stabilin 2 [Source:ZFIN;Acc:ZDB-GENE-041210-336]
Coordinates
chr4:10738682-10739614:+
Coord C1 exon
chr4:10738682-10738793
Coord A exon
chr4:10738865-10739042
Coord C2 exon
chr4:10739521-10739614
Length
178 bp
Sequences
Splice sites
3' ss Seq
AGTAGTGTTTTTGCTTCCAGCCT
3' ss Score
4.47
5' ss Seq
CACGTGAGT
5' ss Score
9.3
Exon sequences
Seq C1 exon
TGCTCAGAAGGCATTGATGGAAACGGCACGTGCCAGTGTGAGCCCAAGTTCAAAGGATCGCGCTGCCAATACTGCGCTGACTCCAACAAATATGGCCCGAACTGTGACAAAA
Seq A exon
CCTGTTGGTGCATACATGGCACATGCGATAACCATCCAGAAGCCAGTGGGAAATGTAAGCAGGGCTCCTGTAAAGACGGCTATACCGGAGAGTACTGCGAGCTGCAGACCCAGCCGTGTGGACCAAACCAGCCCTGTCATGCACACGCCAACTGTGTGTCCAATAAAGGAGCATTCAC
Seq C2 exon
GTGTGTTTGTAAACCTGGTTTTCAAGGAGATGGATACATGTGCATGGAAAGTGATCCCTGCGCTTTACCTCATCGCGGAGGCTGCAGCAAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045748-'25-28,'25-27,26-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF129472=EGF_3=PU(57.1=33.3)
C2:
PF129472=EGF_3=PD(40.0=43.8),PF129472=EGF_3=PU(25.0=28.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTCAGAAGGCATTGATGGA
R:
ATTTTTGCTGCAGCCTCCGC
Band lengths:
206-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]