GgaEX6002366 @ galGal4
Exon Skipping
Gene
ENSGALG00000012751 | STAB2
Description
stabilin 2 [Source:HGNC Symbol;Acc:HGNC:18629]
Coordinates
chr1:54968326-54971677:-
Coord C1 exon
chr1:54971566-54971677
Coord A exon
chr1:54969403-54969583
Coord C2 exon
chr1:54968326-54968419
Length
181 bp
Sequences
Splice sites
3' ss Seq
CTGTATTTTGTCTCTGGTAGAGT
3' ss Score
7.55
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
TGCATAGATGGCCTGGATGGAAATGGGACCTGCATTTGTGCTGCGGCATTTCAAGGCTCTCTCTGCCAGTTCTGCTCAGACCCTGACAAATACGGACCTCAATGTGACAAAA
Seq A exon
AGTGCCTCTGCATTTATGGGAAGTGTGATAACCGAATAGACAGCGATGGAATCTGTCTTCCTGGATCATGCAGAAATGGATACACCGGGAAATTCTGCGATAAGGCAGTTGTTCCCTGCGAGCCCTCTCTGCAGCTCTGCCATGAGCACGCAGACTGTCAGCTTAGTGATGGTGCAGTGAG
Seq C2 exon
CTGTGTTTGCAAGTCTGGCTATGAGGGAGATGGCATGACCTGCAGCAAAGTCGATCCCTGTGCTAGTTTAAATTCAGGTGGCTGCAGTATACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012751-'25-27,'25-26,26-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(57.1=52.6)
A:
PF129472=EGF_3=PU(58.3=34.4)
C2:
PF129472=EGF_3=PD(38.9=43.8),PF129472=EGF_3=PU(28.9=34.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCATAGATGGCCTGGATGGA
R:
TGTATACTGCAGCCACCTGAA
Band lengths:
205-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]