MmuEX6050446 @ mm10
Exon Skipping
Gene
ENSMUSG00000035459 | Stab2
Description
stabilin 2 [Source:MGI Symbol;Acc:MGI:2178743]
Coordinates
chr10:86934848-86940730:-
Coord C1 exon
chr10:86940619-86940730
Coord A exon
chr10:86937893-86938073
Coord C2 exon
chr10:86934848-86934944
Length
181 bp
Sequences
Splice sites
3' ss Seq
TCTCTCCCCTTCTCTTCCAGCCT
3' ss Score
10.81
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
TGCATAGACGGCCTCGGTGGCAATGGGACCTGCATCTGTGAGGATGGCTTCCAAGGTTCCAGGTGTCAGTTCTGCTCCAAACCCAACAGATATGGACCTCAGTGTAACAGAA
Seq A exon
CCTGCCAGTGTGTTCATGGAATATGTGATAACAGACTGGACAGCGATGGATCCTGCCTGCCAGGAACATGCCGAGAGGGCACAGCTGGGAGGTTCTGTGACAAGCAGACGTCAGCCTGTGGGCCCTATATGCAATTCTGTCACATCCATGCCACCTGTGAATACAGCAATGAGACAGCCAG
Seq C2 exon
CTGTGTCTGCAATGACGGCTATGAAGGAGATGGAACTCTCTGTTCTAAGAAGGACCCTTGCCTGGGATCGACCTCCAGAGGAGGATGTAGTCCTAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035459-'23-32,'23-31,24-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(57.1=52.6)
A:
PF129472=EGF_3=PU(58.3=34.4)
C2:
PF129472=EGF_3=PD(38.9=42.4),PF129472=EGF_3=PU(25.0=27.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCATAGACGGCCTCGGTG
R:
GGACTACATCCTCCTCTGGA
Band lengths:
205-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types