BtaEX6023986 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000046389 | KLRD1
Description
Bos taurus killer cell lectin-like receptor subfamily D, member 1 (KLRD1), mRNA. [Source:RefSeq mRNA;Acc:NM_001002890]
Coordinates
chr5:100099877-100101039:-
Coord C1 exon
chr5:100101033-100101039
Coord A exon
chr5:100100062-100100154
Coord C2 exon
chr5:100099877-100099927
Length
93 bp
Sequences
Splice sites
3' ss Seq
TATCCCATCTTTCTTTATAGCTT
3' ss Score
9.88
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
ATGGCAG
Seq A exon
CTTTTCGGACCACTGCATGGAGGTTGATCTCTGGGGTCTTAGGAGTAATATGCCTTGTGTTGATGGCTGCTTTGGGAGTTCTGTTAAAAAATT
Seq C2 exon
CACTTACTAAACGAAGTGTTCAGCCTGGACCCTCTGCAGATCTTCAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046389-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]