RnoEX0047527 @ rn6
Exon Skipping
Gene
ENSRNOG00000060246 | Klrd1
Description
killer cell lectin like receptor D1 [Source:RGD Symbol;Acc:2978]
Coordinates
chr4:163362284-163364040:+
Coord C1 exon
chr4:163362284-163362372
Coord A exon
chr4:163363739-163363831
Coord C2 exon
chr4:163363978-163364040
Length
93 bp
Sequences
Splice sites
3' ss Seq
TGTCTGTTATTTTTCTATAGTTT
3' ss Score
8.56
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
CTTCCTGCTCAGATCCGTGATCCACACCGTTCTTTACAAAGCACAAACACATCTCTGCACCATCCTTGGAACATCACTTCTCATGGCAG
Seq A exon
TTTCTAGGATCACTCGATGGAGGTTGATGTCCATGTTCTTTGGAATAAAATGTCTTTTCTTGATAGTTGCTTTGGGAGTTTTGGTGAAAAATT
Seq C2 exon
CATTTACTATACAGAACATTCAATCGACACCTTCTTCAACCCCGATAGTAGAATTCCAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000060246_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSRNOT00000082064fB7451
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCTGCTCAGATCCGTGAT
R:
TTTCTGGAATTCTACTATCGGGGT
Band lengths:
151-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]