HsaEX0034919 @ hg19
Exon Skipping
Gene
ENSG00000134539 | KLRD1
Description
killer cell lectin-like receptor subfamily D, member 1 [Source:HGNC Symbol;Acc:6378]
Coordinates
chr12:10460417-10462287:+
Coord C1 exon
chr12:10460417-10460683
Coord A exon
chr12:10461987-10462079
Coord C2 exon
chr12:10462225-10462287
Length
93 bp
Sequences
Splice sites
3' ss Seq
CTGTCTGTCTTTCTCTACAGTGT
3' ss Score
12.25
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
CTGTATTGTGGTTCCTGGAACACTTCAGAGGCTTGTGATTCTACTGCTTCTTATTCACACTATAATACATGTCTCACCAATAGATGATTCAAGAACATCATTTAAATACACAATTTTTCATTCTCTATTTTTGCTAAATTTCTTCATACTCAACTTTCAGATTCTTTAATCTCCAGCTCAGCTTCAACAATTCAACGCTGTTCTTTCTGAAAAAGTACACATCGTGCCTTCTCTACTTCGCTCTTGGAACATAATTTCTCATGGCAG
Seq A exon
TGTTTAAGACCACTCTGTGGAGGTTAATTTCTGGGACCTTAGGGATAATATGCCTTTCGTTGATGTCTACGTTGGGAATTTTGTTGAAAAATT
Seq C2 exon
CTTTTACTAAACTGAGTATTGAGCCAGCATTTACTCCAGGACCCAACATAGAACTCCAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000134539_MULTIEX1-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF059667=Chordopox_A33R=PU(24.7=71.9)
C2:
PF052948=Toxin_5=PU(45.5=68.2),PF059667=Chordopox_A33R=FE(22.6=100)


Other Inclusion Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTTTAATCTCCAGCTCAGCTTCA
R:
TTCTGGAGTTCTATGTTGGGTCCT
Band lengths:
167-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)