MmuEX6007376 @ mm10
Exon Skipping
Gene
ENSMUSG00000030165 | Klrd1
Description
killer cell lectin-like receptor, subfamily D, member 1 [Source:MGI Symbol;Acc:MGI:1196275]
Coordinates
chr6:129591782-129593790:+
Coord C1 exon
chr6:129591782-129591837
Coord A exon
chr6:129593490-129593582
Coord C2 exon
chr6:129593728-129593790
Length
93 bp
Sequences
Splice sites
3' ss Seq
TGTTTGGTATTTTTTTATAGTTT
3' ss Score
6.83
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
TTAAAAAGCACAAACACATCTCTGCACCATCCTTGGAACATCACTTCTCATGGCAG
Seq A exon
TTTCTAGGATCACTCGGTGGAGACTGATGTCTGTCATCTTTGGAATAAAATGTCTTTTCTTGATGGTTACTTTGGGAGTTTTGCTGATAAATT
Seq C2 exon
CATTTACTATACAGAACATTCAATCAACACCTTCTCCAACCACCACTGTAGAATTCCAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030165-'0-11,'0-0,1-11=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF083915=Ly49=PU(43.1=87.5)
C2:
PF083915=Ly49=FE(32.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTAAAAAGCACAAACACATCTCTGCA
R:
CTTCCTGGAATTCTACAGTGGTGG
Band lengths:
119-212
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types