BtaEX6023993 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MTH2]
Coordinates
chr5:100113181-100116007:-
Coord C1 exon
chr5:100115963-100116007
Coord A exon
chr5:100115320-100115471
Coord C2 exon
chr5:100113181-100113284
Length
152 bp
Sequences
Splice sites
3' ss Seq
TGTTTTATCATTTCTTCTAGAAT
3' ss Score
9.08
5' ss Seq
CTGGCAAGT
5' ss Score
2.89
Exon sequences
Seq C1 exon
AATATAATTTCTATGAGGAAAAAGGGTCATGTCTGAGTTGTTCAA
Seq A exon
AATCTTGCTGCTATTCTTGCCAAGAAAAATGGATTGGCTACCAATGCAACTGTTATTTCATCTCTAATGAAGTAAAAGCATGGGAAGACAGTAGGGATTTTTGTGTTTCTCATAATTCCAGTCTACTTCAGATACAAAACAGAAATGAACTG
Seq C2 exon
GATTTTATGAAGTTCAGTTCCAGTTTTTACTGGATTGGACTCTCTTACAGTGAAGAACATCATGCCTGGTTGTGGGAGGACAATTCTACTCTCTCCCAAGATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000966-'4-5,'4-2,5-5=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0005916=Lectin_C=PU(27.3=52.9)
C2:
PF0005916=Lectin_C=FE(34.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTATGAGGAAAAAGGGTCATGTCT
R:
TCTTGGGAGAGAGTAGAATTGTCCT
Band lengths:
138-290
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]