HsaEX6065163 @ hg38
Exon Skipping
Gene
ENSG00000134539 | KLRD1
Description
killer cell lectin like receptor D1 [Source:HGNC Symbol;Acc:HGNC:6378]
Coordinates
chr12:10307978-10313513:+
Coord C1 exon
chr12:10307978-10308084
Coord A exon
chr12:10311464-10311615
Coord C2 exon
chr12:10313410-10313513
Length
152 bp
Sequences
Splice sites
3' ss Seq
TGCTTTATGTTTTCTGTCAGACT
3' ss Score
7.31
5' ss Seq
CTGGCATGT
5' ss Score
0.38
Exon sequences
Seq C1 exon
ATTCTTTAATCTCCAGCTCAGCTTCAACAATTCAACGCTGTTCTTTCTGAAAAAGTACACATCGTGCCTTCTCTACTTCGCTCTTGGAACATAATTTCTCATGGCAG
Seq A exon
ACTCTGACTGCTGTTCTTGCCAAGAAAAATGGGTTGGGTACCGGTGCAACTGTTACTTCATTTCCAGTGAACAGAAAACTTGGAACGAAAGTCGGCATCTCTGTGCTTCTCAGAAATCCAGCCTGCTTCAGCTTCAAAACACAGATGAACTG
Seq C2 exon
GATTTTATGAGCTCCAGTCAACAATTTTACTGGATTGGACTCTCTTACAGTGAGGAGCACACCGCCTGGTTGTGGGAGAATGGCTCTGCACTCTCCCAGTATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000134539_MULTIEX1-3/4=C1-4
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0005916=Lectin_C=PU(27.3=52.9)
C2:
PF0005916=Lectin_C=FE(34.3=100)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTTTAATCTCCAGCTCAGCTTCA
R:
AGATACTGGGAGAGTGCAGAGC
Band lengths:
210-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains