RnoEX6015315 @ rn6
Exon Skipping
Gene
ENSRNOG00000060246 | Klrd1
Description
killer cell lectin like receptor D1 [Source:RGD Symbol;Acc:2978]
Coordinates
chr4:163363978-163368112:+
Coord C1 exon
chr4:163363978-163364040
Coord A exon
chr4:163365609-163365760
Coord C2 exon
chr4:163368009-163368112
Length
152 bp
Sequences
Splice sites
3' ss Seq
TGATGTGTTTTTTCTATTAGTTT
3' ss Score
7.77
5' ss Seq
TTGGCAAGT
5' ss Score
2.72
Exon sequences
Seq C1 exon
CATTTACTATACAGAACATTCAATCGACACCTTCTTCAACCCCGATAGTAGAATTCCAGAAAG
Seq A exon
TTTCTAAATGCTGTGCTTGCCTGGAAAAGTGGATTGGGCATCAATGCAGTTGTTACTTTATTTCCAAAGAAGAAAAGTCCTGGAAAGGAAGCAGAGAGTTTTGTGCTTCTCAGAATTCCAGTCTTCTTCAGCTCCAAACCAGAAATGAATTG
Seq C2 exon
AGTTTTATGAGCTCCAGTCAAGCCTTTTTCTGGATTGGAATCCACTATAATGAAGAAAGAAGTGCCTGGCTATGGGAGGATGGCACATTTCCCTCAAAAGATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000060246-'6-12,'6-7,7-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0005916=Lectin_C=PU(27.3=52.9)
C2:
PF0005916=Lectin_C=FE(34.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTATACAGAACATTCAATCGACACC
R:
AAATCTTTTGAGGGAAATGTGCCA
Band lengths:
162-314
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]