BtaEX6024018 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004293 | CLEC12B
Description
C-type lectin domain family 12, member B [Source:HGNC Symbol;Acc:HGNC:31966]
Coordinates
chr5:100371291-100372691:+
Coord C1 exon
chr5:100371291-100371509
Coord A exon
chr5:100372019-100372173
Coord C2 exon
chr5:100372576-100372691
Length
155 bp
Sequences
Splice sites
3' ss Seq
GGGTGTAATTTCTTTTTCAGACC
3' ss Score
8.59
5' ss Seq
AAGGTCAGG
5' ss Score
6.23
Exon sequences
Seq C1 exon
TTTTGCAGATGTCCAGCGAAATTAACTCAGATTCAGACAAACTGACTCAACTCCAGAAAATCATCCACCAACAGCAGGACAACTTATCCCAGCAGCTGAGCAAGTACAGGAACTTTCCTGTGGAGGAGGAATTTCTCAAATCACAAATCTCCAGTCTATTGAAGAGGCAGGGACAAATGGCCATCAAACTCTGCCAAGAGCTAATCATTCATACTTCAG
Seq A exon
ACCACAAATGCAATCCTTGTCCTAAGACCTGGAAATGGTACCAAACCAGCTGCTATTATTTTGCAGTAAATGAGGAAAAAACCTGGCCTAACAGTAGAAAAAACTGCATGGACAAGAACTCCACGCTGGTGAAGATAGACAGCCTAGAAGAAAAG
Seq C2 exon
GATTTTCTGAGGTCACAACCATTACCCAAGTTTCCTTTCTTCTGGTTGGGACTATCTTGGGACCCATCTGGCAGAAGTTGGCTTTGGGAGGATAGCTCTAGACCCTCTCCATCCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004293-'2-5,'2-3,3-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083915=Ly49=FE(59.8=100)
A:
PF083915=Ly49=PD(16.4=38.5),PF0005916=Lectin_C=PU(25.7=51.9)
C2:
PF0005916=Lectin_C=FE(36.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACCAACAGCAGGACAACTT
R:
CCAAAGCCAACTTCTGCCAGA
Band lengths:
242-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]